Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23470

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23460 and AO356_23465 are separated by 56 nucleotidesAO356_23465 and AO356_23470 are separated by 58 nucleotidesAO356_23470 and AO356_23475 are separated by 74 nucleotides AO356_23460: AO356_23460 - porin, at 5,259,287 to 5,259,985 _23460 AO356_23465: AO356_23465 - polyketide cyclase, at 5,260,042 to 5,260,512 _23465 AO356_23470: AO356_23470 - polyketide synthase, at 5,260,571 to 5,263,981 _23470 AO356_23475: AO356_23475 - polyketide synthase, at 5,264,056 to 5,265,147 _23475 Position (kb) 5260 5261 5262 5263 5264Strain fitness (log2 ratio) -2 -1 0 1 2at 5259.609 kb on + strand, within AO356_23460at 5259.609 kb on + strand, within AO356_23460at 5259.678 kb on + strand, within AO356_23460at 5259.888 kb on + strand, within AO356_23460at 5259.889 kb on - strand, within AO356_23460at 5259.977 kb on + strandat 5259.989 kb on - strandat 5260.014 kb on + strandat 5260.015 kb on - strandat 5260.045 kb on + strandat 5260.046 kb on - strandat 5260.175 kb on + strand, within AO356_23465at 5260.656 kb on + strandat 5260.656 kb on + strandat 5260.656 kb on + strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.824 kb on + strandat 5260.824 kb on + strandat 5260.824 kb on + strandat 5260.825 kb on - strandat 5260.825 kb on - strandat 5260.825 kb on - strandat 5260.864 kb on - strandat 5260.864 kb on - strandat 5261.055 kb on + strand, within AO356_23470at 5261.056 kb on - strand, within AO356_23470at 5261.172 kb on - strand, within AO356_23470at 5261.175 kb on + strand, within AO356_23470at 5261.175 kb on + strand, within AO356_23470at 5261.176 kb on - strand, within AO356_23470at 5261.176 kb on - strand, within AO356_23470at 5261.208 kb on + strand, within AO356_23470at 5261.314 kb on - strand, within AO356_23470at 5261.347 kb on - strand, within AO356_23470at 5261.386 kb on + strand, within AO356_23470at 5261.386 kb on + strand, within AO356_23470at 5261.386 kb on + strand, within AO356_23470at 5261.387 kb on - strand, within AO356_23470at 5261.983 kb on + strand, within AO356_23470at 5261.985 kb on + strand, within AO356_23470at 5262.289 kb on - strand, within AO356_23470at 5262.289 kb on - strand, within AO356_23470at 5262.307 kb on + strand, within AO356_23470at 5262.307 kb on + strand, within AO356_23470at 5262.307 kb on + strand, within AO356_23470at 5262.307 kb on + strand, within AO356_23470at 5262.308 kb on - strand, within AO356_23470at 5262.308 kb on - strand, within AO356_23470at 5262.308 kb on - strand, within AO356_23470at 5262.308 kb on - strand, within AO356_23470at 5262.309 kb on + strand, within AO356_23470at 5262.310 kb on - strand, within AO356_23470at 5262.543 kb on + strand, within AO356_23470at 5262.544 kb on - strand, within AO356_23470at 5262.726 kb on + strand, within AO356_23470at 5262.727 kb on - strand, within AO356_23470at 5262.727 kb on - strand, within AO356_23470at 5262.727 kb on - strand, within AO356_23470at 5262.908 kb on + strand, within AO356_23470at 5262.908 kb on + strand, within AO356_23470at 5263.089 kb on + strand, within AO356_23470at 5263.090 kb on - strand, within AO356_23470at 5263.090 kb on - strand, within AO356_23470at 5263.782 kb on + strandat 5263.815 kb on + strandat 5263.815 kb on + strandat 5263.815 kb on + strandat 5263.816 kb on - strandat 5263.981 kb on + strandat 5263.982 kb on - strandat 5264.495 kb on + strand, within AO356_23475at 5264.698 kb on - strand, within AO356_23475at 5264.698 kb on - strand, within AO356_23475at 5264.810 kb on + strand, within AO356_23475at 5264.811 kb on - strand, within AO356_23475at 5264.811 kb on - strand, within AO356_23475at 5264.863 kb on + strand, within AO356_23475at 5264.937 kb on - strand, within AO356_23475

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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5,259,609 + AO356_23460 0.46 -1.0
5,259,609 + AO356_23460 0.46 -0.2
5,259,678 + AO356_23460 0.56 +0.1
5,259,888 + AO356_23460 0.86 -0.0
5,259,889 - AO356_23460 0.86 +0.3
5,259,977 + -0.3
5,259,989 - -0.6
5,260,014 + +0.8
5,260,015 - +0.2
5,260,045 + -1.5
5,260,046 - -0.0
5,260,175 + AO356_23465 0.28 -0.2
5,260,656 + +0.4
5,260,656 + -0.4
5,260,656 + +0.0
5,260,657 - +0.5
5,260,657 - -0.5
5,260,657 - -0.2
5,260,657 - +0.8
5,260,657 - -0.6
5,260,824 + +0.9
5,260,824 + -0.4
5,260,824 + +0.8
5,260,825 - +0.3
5,260,825 - -0.4
5,260,825 - +1.8
5,260,864 - -1.7
5,260,864 - +0.4
5,261,055 + AO356_23470 0.14 -0.0
5,261,056 - AO356_23470 0.14 +0.7
5,261,172 - AO356_23470 0.18 -1.7
5,261,175 + AO356_23470 0.18 -1.2
5,261,175 + AO356_23470 0.18 -0.4
5,261,176 - AO356_23470 0.18 -0.7
5,261,176 - AO356_23470 0.18 +0.7
5,261,208 + AO356_23470 0.19 +0.5
5,261,314 - AO356_23470 0.22 -0.2
5,261,347 - AO356_23470 0.23 +1.1
5,261,386 + AO356_23470 0.24 -1.1
5,261,386 + AO356_23470 0.24 +0.6
5,261,386 + AO356_23470 0.24 -0.7
5,261,387 - AO356_23470 0.24 -0.2
5,261,983 + AO356_23470 0.41 -1.0
5,261,985 + AO356_23470 0.41 -0.2
5,262,289 - AO356_23470 0.50 -0.5
5,262,289 - AO356_23470 0.50 +0.6
5,262,307 + AO356_23470 0.51 -0.6
5,262,307 + AO356_23470 0.51 -0.8
5,262,307 + AO356_23470 0.51 -0.7
5,262,307 + AO356_23470 0.51 +1.2
5,262,308 - AO356_23470 0.51 +0.4
5,262,308 - AO356_23470 0.51 -0.6
5,262,308 - AO356_23470 0.51 +0.4
5,262,308 - AO356_23470 0.51 +0.4
5,262,309 + AO356_23470 0.51 -2.2
5,262,310 - AO356_23470 0.51 +0.3
5,262,543 + AO356_23470 0.58 -0.2
5,262,544 - AO356_23470 0.58 +0.5
5,262,726 + AO356_23470 0.63 +1.4
5,262,727 - AO356_23470 0.63 -0.0
5,262,727 - AO356_23470 0.63 +0.1
5,262,727 - AO356_23470 0.63 +0.6
5,262,908 + AO356_23470 0.69 +0.2
5,262,908 + AO356_23470 0.69 -1.0
5,263,089 + AO356_23470 0.74 -0.5
5,263,090 - AO356_23470 0.74 -0.4
5,263,090 - AO356_23470 0.74 -0.3
5,263,782 + +0.1
5,263,815 + -0.4
5,263,815 + +0.0
5,263,815 + +0.8
5,263,816 - -2.2
5,263,981 + +0.3
5,263,982 - +0.6
5,264,495 + AO356_23475 0.40 +0.8
5,264,698 - AO356_23475 0.59 -0.3
5,264,698 - AO356_23475 0.59 -0.8
5,264,810 + AO356_23475 0.69 +0.2
5,264,811 - AO356_23475 0.69 -0.4
5,264,811 - AO356_23475 0.69 -0.5
5,264,863 + AO356_23475 0.74 -0.4
5,264,937 - AO356_23475 0.81 +0.3

Or see this region's nucleotide sequence