Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16355 and AO356_16360 are separated by 94 nucleotides AO356_16360 and AO356_16365 overlap by 4 nucleotides AO356_16365 and AO356_16370 overlap by 14 nucleotides AO356_16370 and AO356_16375 are separated by 48 nucleotides
AO356_16355: AO356_16355 - hypothetical protein, at 3,697,026 to 3,698,300
_16355
AO356_16360: AO356_16360 - hypothetical protein, at 3,698,395 to 3,698,682
_16360
AO356_16365: AO356_16365 - hypothetical protein, at 3,698,679 to 3,699,377
_16365
AO356_16370: AO356_16370 - hypothetical protein, at 3,699,364 to 3,700,089
_16370
AO356_16375: AO356_16375 - hypothetical protein, at 3,700,138 to 3,701,064
_16375
Position (kb)
3698
3699
3700 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3697.692 kb on + strand, within AO356_16355 at 3697.750 kb on - strand, within AO356_16355 at 3697.750 kb on - strand, within AO356_16355 at 3697.781 kb on + strand, within AO356_16355 at 3697.781 kb on + strand, within AO356_16355 at 3697.781 kb on + strand, within AO356_16355 at 3697.781 kb on + strand, within AO356_16355 at 3697.782 kb on - strand, within AO356_16355 at 3697.782 kb on - strand, within AO356_16355 at 3697.782 kb on - strand, within AO356_16355 at 3697.920 kb on + strand, within AO356_16355 at 3697.992 kb on + strand, within AO356_16355 at 3697.993 kb on - strand, within AO356_16355 at 3698.031 kb on + strand, within AO356_16355 at 3698.031 kb on + strand, within AO356_16355 at 3698.041 kb on + strand, within AO356_16355 at 3698.041 kb on + strand, within AO356_16355 at 3698.042 kb on - strand, within AO356_16355 at 3698.080 kb on - strand, within AO356_16355 at 3698.106 kb on + strand, within AO356_16355 at 3698.106 kb on + strand, within AO356_16355 at 3698.106 kb on + strand, within AO356_16355 at 3698.107 kb on - strand, within AO356_16355 at 3698.107 kb on - strand, within AO356_16355 at 3698.107 kb on - strand, within AO356_16355 at 3698.107 kb on - strand, within AO356_16355 at 3698.298 kb on + strand at 3698.347 kb on + strand at 3698.440 kb on - strand, within AO356_16360 at 3698.460 kb on + strand, within AO356_16360 at 3698.460 kb on + strand, within AO356_16360 at 3698.461 kb on - strand, within AO356_16360 at 3698.461 kb on - strand, within AO356_16360 at 3698.533 kb on + strand, within AO356_16360 at 3698.533 kb on + strand, within AO356_16360 at 3698.533 kb on + strand, within AO356_16360 at 3698.533 kb on + strand, within AO356_16360 at 3698.533 kb on + strand, within AO356_16360 at 3698.534 kb on - strand, within AO356_16360 at 3698.534 kb on - strand, within AO356_16360 at 3698.623 kb on + strand, within AO356_16360 at 3698.623 kb on + strand, within AO356_16360 at 3698.623 kb on + strand, within AO356_16360 at 3698.623 kb on + strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.624 kb on - strand, within AO356_16360 at 3698.635 kb on + strand, within AO356_16360 at 3698.635 kb on + strand, within AO356_16360 at 3698.635 kb on + strand, within AO356_16360 at 3698.635 kb on + strand, within AO356_16360 at 3698.635 kb on + strand, within AO356_16360 at 3698.635 kb on + strand, within AO356_16360 at 3698.636 kb on - strand, within AO356_16360 at 3698.636 kb on - strand, within AO356_16360 at 3698.636 kb on - strand, within AO356_16360 at 3698.909 kb on + strand, within AO356_16365 at 3698.909 kb on + strand, within AO356_16365 at 3698.909 kb on + strand, within AO356_16365 at 3698.910 kb on - strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.940 kb on + strand, within AO356_16365 at 3698.941 kb on - strand, within AO356_16365 at 3698.941 kb on - strand, within AO356_16365 at 3698.994 kb on + strand, within AO356_16365 at 3698.995 kb on - strand, within AO356_16365 at 3698.995 kb on - strand, within AO356_16365 at 3699.034 kb on + strand, within AO356_16365 at 3699.034 kb on + strand, within AO356_16365 at 3699.034 kb on + strand, within AO356_16365 at 3699.035 kb on - strand, within AO356_16365 at 3699.035 kb on - strand, within AO356_16365 at 3699.035 kb on - strand, within AO356_16365 at 3699.035 kb on - strand, within AO356_16365 at 3699.035 kb on - strand, within AO356_16365 at 3699.042 kb on + strand, within AO356_16365 at 3699.161 kb on - strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.181 kb on + strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.182 kb on - strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.263 kb on + strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.264 kb on - strand, within AO356_16365 at 3699.455 kb on + strand, within AO356_16370 at 3699.455 kb on + strand, within AO356_16370 at 3699.455 kb on + strand, within AO356_16370 at 3699.455 kb on + strand, within AO356_16370 at 3699.456 kb on - strand, within AO356_16370 at 3699.456 kb on - strand, within AO356_16370 at 3699.456 kb on - strand, within AO356_16370 at 3699.456 kb on - strand, within AO356_16370 at 3699.486 kb on + strand, within AO356_16370 at 3699.487 kb on - strand, within AO356_16370 at 3699.487 kb on - strand, within AO356_16370 at 3699.532 kb on + strand, within AO356_16370 at 3699.533 kb on - strand, within AO356_16370 at 3699.806 kb on + strand, within AO356_16370 at 3699.806 kb on + strand, within AO356_16370 at 3699.806 kb on + strand, within AO356_16370 at 3699.807 kb on - strand, within AO356_16370 at 3699.807 kb on - strand, within AO356_16370 at 3699.840 kb on + strand, within AO356_16370 at 3699.840 kb on + strand, within AO356_16370 at 3699.878 kb on + strand, within AO356_16370 at 3699.878 kb on + strand, within AO356_16370 at 3699.878 kb on + strand, within AO356_16370 at 3699.878 kb on + strand, within AO356_16370 at 3699.878 kb on + strand, within AO356_16370 at 3699.878 kb on + strand, within AO356_16370 at 3699.879 kb on - strand, within AO356_16370 at 3699.879 kb on - strand, within AO356_16370 at 3699.879 kb on - strand, within AO356_16370 at 3699.879 kb on - strand, within AO356_16370 at 3699.893 kb on + strand, within AO356_16370 at 3699.894 kb on - strand, within AO356_16370 at 3700.279 kb on - strand, within AO356_16375 at 3700.337 kb on - strand, within AO356_16375
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,697,692 + AO356_16355 0.52 +0.4 3,697,750 - AO356_16355 0.57 -0.0 3,697,750 - AO356_16355 0.57 -0.5 3,697,781 + AO356_16355 0.59 -0.1 3,697,781 + AO356_16355 0.59 +0.7 3,697,781 + AO356_16355 0.59 -0.8 3,697,781 + AO356_16355 0.59 +0.2 3,697,782 - AO356_16355 0.59 +0.3 3,697,782 - AO356_16355 0.59 +0.3 3,697,782 - AO356_16355 0.59 -0.2 3,697,920 + AO356_16355 0.70 -2.4 3,697,992 + AO356_16355 0.76 -0.5 3,697,993 - AO356_16355 0.76 -0.4 3,698,031 + AO356_16355 0.79 +0.5 3,698,031 + AO356_16355 0.79 +0.2 3,698,041 + AO356_16355 0.80 -0.5 3,698,041 + AO356_16355 0.80 +0.2 3,698,042 - AO356_16355 0.80 +0.3 3,698,080 - AO356_16355 0.83 -0.1 3,698,106 + AO356_16355 0.85 +0.6 3,698,106 + AO356_16355 0.85 +0.2 3,698,106 + AO356_16355 0.85 -0.7 3,698,107 - AO356_16355 0.85 +0.2 3,698,107 - AO356_16355 0.85 +0.3 3,698,107 - AO356_16355 0.85 -0.2 3,698,107 - AO356_16355 0.85 -0.2 3,698,298 + +0.5 3,698,347 + +0.2 3,698,440 - AO356_16360 0.16 -0.2 3,698,460 + AO356_16360 0.23 +0.1 3,698,460 + AO356_16360 0.23 -0.4 3,698,461 - AO356_16360 0.23 -1.4 3,698,461 - AO356_16360 0.23 -1.0 3,698,533 + AO356_16360 0.48 -1.2 3,698,533 + AO356_16360 0.48 +0.4 3,698,533 + AO356_16360 0.48 -0.1 3,698,533 + AO356_16360 0.48 +1.0 3,698,533 + AO356_16360 0.48 -0.3 3,698,534 - AO356_16360 0.48 +0.2 3,698,534 - AO356_16360 0.48 -0.9 3,698,623 + AO356_16360 0.79 +0.4 3,698,623 + AO356_16360 0.79 +0.5 3,698,623 + AO356_16360 0.79 -0.6 3,698,623 + AO356_16360 0.79 -0.6 3,698,624 - AO356_16360 0.80 -0.4 3,698,624 - AO356_16360 0.80 +0.3 3,698,624 - AO356_16360 0.80 +0.7 3,698,624 - AO356_16360 0.80 -0.7 3,698,624 - AO356_16360 0.80 +0.2 3,698,624 - AO356_16360 0.80 +0.6 3,698,624 - AO356_16360 0.80 -0.4 3,698,635 + AO356_16360 0.83 +0.7 3,698,635 + AO356_16360 0.83 +0.5 3,698,635 + AO356_16360 0.83 +0.2 3,698,635 + AO356_16360 0.83 -1.1 3,698,635 + AO356_16360 0.83 +1.0 3,698,635 + AO356_16360 0.83 -0.9 3,698,636 - AO356_16360 0.84 -0.1 3,698,636 - AO356_16360 0.84 -0.2 3,698,636 - AO356_16360 0.84 -0.1 3,698,909 + AO356_16365 0.33 -0.1 3,698,909 + AO356_16365 0.33 -0.5 3,698,909 + AO356_16365 0.33 +0.5 3,698,910 - AO356_16365 0.33 +0.7 3,698,940 + AO356_16365 0.37 -0.1 3,698,940 + AO356_16365 0.37 -1.0 3,698,940 + AO356_16365 0.37 -0.3 3,698,940 + AO356_16365 0.37 -0.2 3,698,940 + AO356_16365 0.37 -0.3 3,698,940 + AO356_16365 0.37 -1.2 3,698,940 + AO356_16365 0.37 -0.1 3,698,940 + AO356_16365 0.37 +1.2 3,698,941 - AO356_16365 0.37 +0.2 3,698,941 - AO356_16365 0.37 +1.3 3,698,994 + AO356_16365 0.45 -1.5 3,698,995 - AO356_16365 0.45 -0.5 3,698,995 - AO356_16365 0.45 -0.3 3,699,034 + AO356_16365 0.51 +1.7 3,699,034 + AO356_16365 0.51 +0.1 3,699,034 + AO356_16365 0.51 +0.4 3,699,035 - AO356_16365 0.51 -0.4 3,699,035 - AO356_16365 0.51 +1.7 3,699,035 - AO356_16365 0.51 +0.0 3,699,035 - AO356_16365 0.51 +0.0 3,699,035 - AO356_16365 0.51 -0.5 3,699,042 + AO356_16365 0.52 -1.3 3,699,161 - AO356_16365 0.69 -0.3 3,699,181 + AO356_16365 0.72 -0.9 3,699,181 + AO356_16365 0.72 -1.1 3,699,181 + AO356_16365 0.72 +0.3 3,699,181 + AO356_16365 0.72 -1.4 3,699,181 + AO356_16365 0.72 -0.3 3,699,181 + AO356_16365 0.72 -0.5 3,699,181 + AO356_16365 0.72 -0.3 3,699,181 + AO356_16365 0.72 -0.2 3,699,181 + AO356_16365 0.72 +0.2 3,699,181 + AO356_16365 0.72 -0.4 3,699,181 + AO356_16365 0.72 -0.7 3,699,181 + AO356_16365 0.72 +0.3 3,699,182 - AO356_16365 0.72 +0.6 3,699,182 - AO356_16365 0.72 -0.7 3,699,182 - AO356_16365 0.72 -1.0 3,699,182 - AO356_16365 0.72 +1.8 3,699,182 - AO356_16365 0.72 -0.1 3,699,182 - AO356_16365 0.72 +1.5 3,699,182 - AO356_16365 0.72 +0.3 3,699,182 - AO356_16365 0.72 -1.1 3,699,182 - AO356_16365 0.72 -0.4 3,699,182 - AO356_16365 0.72 +0.7 3,699,182 - AO356_16365 0.72 +1.2 3,699,182 - AO356_16365 0.72 +0.7 3,699,263 + AO356_16365 0.84 +0.2 3,699,263 + AO356_16365 0.84 +0.1 3,699,263 + AO356_16365 0.84 -1.0 3,699,263 + AO356_16365 0.84 +1.4 3,699,263 + AO356_16365 0.84 -1.2 3,699,263 + AO356_16365 0.84 +1.1 3,699,263 + AO356_16365 0.84 -0.4 3,699,263 + AO356_16365 0.84 +0.5 3,699,263 + AO356_16365 0.84 -0.1 3,699,264 - AO356_16365 0.84 -0.1 3,699,264 - AO356_16365 0.84 +0.4 3,699,264 - AO356_16365 0.84 -0.3 3,699,264 - AO356_16365 0.84 +0.7 3,699,264 - AO356_16365 0.84 +0.1 3,699,264 - AO356_16365 0.84 -0.0 3,699,264 - AO356_16365 0.84 -0.2 3,699,455 + AO356_16370 0.13 +0.6 3,699,455 + AO356_16370 0.13 -1.2 3,699,455 + AO356_16370 0.13 +1.4 3,699,455 + AO356_16370 0.13 -0.2 3,699,456 - AO356_16370 0.13 +0.6 3,699,456 - AO356_16370 0.13 +0.5 3,699,456 - AO356_16370 0.13 +0.2 3,699,456 - AO356_16370 0.13 -0.0 3,699,486 + AO356_16370 0.17 -1.4 3,699,487 - AO356_16370 0.17 -0.0 3,699,487 - AO356_16370 0.17 +0.9 3,699,532 + AO356_16370 0.23 +0.5 3,699,533 - AO356_16370 0.23 -1.4 3,699,806 + AO356_16370 0.61 +0.7 3,699,806 + AO356_16370 0.61 +0.7 3,699,806 + AO356_16370 0.61 -0.6 3,699,807 - AO356_16370 0.61 +0.3 3,699,807 - AO356_16370 0.61 -1.6 3,699,840 + AO356_16370 0.66 -1.1 3,699,840 + AO356_16370 0.66 +0.4 3,699,878 + AO356_16370 0.71 -1.4 3,699,878 + AO356_16370 0.71 -0.1 3,699,878 + AO356_16370 0.71 -0.2 3,699,878 + AO356_16370 0.71 +0.1 3,699,878 + AO356_16370 0.71 -0.2 3,699,878 + AO356_16370 0.71 +0.4 3,699,879 - AO356_16370 0.71 -0.6 3,699,879 - AO356_16370 0.71 -1.0 3,699,879 - AO356_16370 0.71 +0.1 3,699,879 - AO356_16370 0.71 -1.3 3,699,893 + AO356_16370 0.73 +0.7 3,699,894 - AO356_16370 0.73 +0.7 3,700,279 - AO356_16375 0.15 -0.4 3,700,337 - AO356_16375 0.21 -0.3
Or see this region's nucleotide sequence