Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15935 and AO356_15940 are separated by 299 nucleotides AO356_15940 and AO356_15945 are separated by 7 nucleotides AO356_15945 and AO356_15950 are separated by 5 nucleotides AO356_15950 and AO356_15955 are separated by 93 nucleotides AO356_15955 and AO356_15960 are separated by 146 nucleotides
AO356_15935: AO356_15935 - ATP-dependent chaperone ClpB, at 3,607,377 to 3,609,941
_15935
AO356_15940: AO356_15940 - tRNA-Asn, at 3,610,241 to 3,610,316
_15940
AO356_15945: AO356_15945 - tRNA-Pro, at 3,610,324 to 3,610,400
_15945
AO356_15950: AO356_15950 - tRNA-Lys, at 3,610,406 to 3,610,481
_15950
AO356_15955: AO356_15955 - tRNA-Pro, at 3,610,575 to 3,610,651
_15955
AO356_15960: AO356_15960 - chemotaxis protein, at 3,610,798 to 3,612,423
_15960
Position (kb)
3610
3611 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3609.333 kb on + strand, within AO356_15935 at 3609.334 kb on - strand, within AO356_15935 at 3609.334 kb on - strand, within AO356_15935 at 3609.334 kb on - strand, within AO356_15935 at 3609.342 kb on + strand, within AO356_15935 at 3609.357 kb on + strand, within AO356_15935 at 3609.358 kb on - strand, within AO356_15935 at 3609.358 kb on - strand, within AO356_15935 at 3609.491 kb on + strand, within AO356_15935 at 3609.491 kb on + strand, within AO356_15935 at 3609.491 kb on + strand, within AO356_15935 at 3609.492 kb on - strand, within AO356_15935 at 3610.028 kb on + strand at 3610.028 kb on + strand at 3610.028 kb on + strand at 3610.028 kb on + strand at 3610.045 kb on + strand at 3610.089 kb on + strand at 3610.089 kb on + strand at 3610.089 kb on + strand at 3610.455 kb on + strand, within AO356_15950 at 3610.581 kb on - strand at 3610.667 kb on + strand at 3610.678 kb on - strand at 3610.726 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.781 kb on - strand at 3610.797 kb on + strand at 3610.818 kb on + strand at 3610.818 kb on + strand at 3610.819 kb on - strand at 3610.819 kb on - strand at 3611.047 kb on + strand, within AO356_15960 at 3611.047 kb on + strand, within AO356_15960 at 3611.048 kb on - strand, within AO356_15960 at 3611.140 kb on + strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.350 kb on + strand, within AO356_15960 at 3611.351 kb on - strand, within AO356_15960 at 3611.351 kb on - strand, within AO356_15960
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,609,333 + AO356_15935 0.76 -0.4 3,609,334 - AO356_15935 0.76 -2.0 3,609,334 - AO356_15935 0.76 -0.3 3,609,334 - AO356_15935 0.76 -0.3 3,609,342 + AO356_15935 0.77 -0.2 3,609,357 + AO356_15935 0.77 +0.5 3,609,358 - AO356_15935 0.77 -0.6 3,609,358 - AO356_15935 0.77 +0.4 3,609,491 + AO356_15935 0.82 +0.3 3,609,491 + AO356_15935 0.82 +0.4 3,609,491 + AO356_15935 0.82 +0.0 3,609,492 - AO356_15935 0.82 -0.7 3,610,028 + -0.4 3,610,028 + +0.2 3,610,028 + -2.0 3,610,028 + -1.6 3,610,045 + +2.2 3,610,089 + +1.3 3,610,089 + -0.2 3,610,089 + -0.2 3,610,455 + AO356_15950 0.64 +0.7 3,610,581 - +3.0 3,610,667 + +0.1 3,610,678 - -0.4 3,610,726 + +0.8 3,610,780 + -0.6 3,610,780 + +0.9 3,610,780 + -0.1 3,610,780 + +0.5 3,610,780 + +1.1 3,610,781 - -0.3 3,610,797 + -0.5 3,610,818 + -0.2 3,610,818 + -2.5 3,610,819 - +0.4 3,610,819 - -0.6 3,611,047 + AO356_15960 0.15 -0.8 3,611,047 + AO356_15960 0.15 -0.4 3,611,048 - AO356_15960 0.15 -0.1 3,611,140 + AO356_15960 0.21 +1.5 3,611,141 - AO356_15960 0.21 +0.5 3,611,141 - AO356_15960 0.21 -0.3 3,611,141 - AO356_15960 0.21 -0.8 3,611,141 - AO356_15960 0.21 -0.2 3,611,350 + AO356_15960 0.34 -0.5 3,611,351 - AO356_15960 0.34 -1.6 3,611,351 - AO356_15960 0.34 -1.0
Or see this region's nucleotide sequence