Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14990 and AO356_14995 are separated by 115 nucleotides AO356_14995 and AO356_15000 overlap by 4 nucleotides AO356_15000 and AO356_15005 are separated by 486 nucleotides
AO356_14990: AO356_14990 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,388,674 to 3,390,572
_14990
AO356_14995: AO356_14995 - geranyl transferase, at 3,390,688 to 3,391,575
_14995
AO356_15000: AO356_15000 - exodeoxyribonuclease VII small subunit, at 3,391,572 to 3,391,814
_15000
AO356_15005: AO356_15005 - hypothetical protein, at 3,392,301 to 3,393,089
_15005
Position (kb)
3391
3392 Strain fitness (log2 ratio)
-1
0
1
2 at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.612 kb on - strand at 3390.612 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.686 kb on + strand at 3390.687 kb on - strand at 3390.687 kb on - strand at 3390.687 kb on - strand at 3391.854 kb on - strand at 3392.054 kb on + strand at 3392.054 kb on + strand at 3392.055 kb on - strand at 3392.070 kb on + strand at 3392.095 kb on + strand at 3392.104 kb on + strand at 3392.105 kb on - strand at 3392.127 kb on + strand at 3392.127 kb on + strand at 3392.128 kb on - strand at 3392.128 kb on - strand at 3392.182 kb on + strand at 3392.182 kb on + strand at 3392.182 kb on + strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.186 kb on + strand at 3392.186 kb on + strand at 3392.187 kb on - strand at 3392.187 kb on - strand at 3392.187 kb on - strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.203 kb on - strand at 3392.215 kb on - strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.318 kb on - strand at 3392.532 kb on - strand, within AO356_15005 at 3392.532 kb on - strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.566 kb on - strand, within AO356_15005 at 3392.566 kb on - strand, within AO356_15005 at 3392.566 kb on - strand, within AO356_15005 at 3392.598 kb on + strand, within AO356_15005 at 3392.599 kb on - strand, within AO356_15005 at 3392.599 kb on - strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.674 kb on - strand, within AO356_15005 at 3392.674 kb on - strand, within AO356_15005 at 3392.756 kb on + strand, within AO356_15005 at 3392.757 kb on - strand, within AO356_15005
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,390,588 - -1.3 3,390,588 - +0.5 3,390,588 - -0.2 3,390,588 - -0.7 3,390,588 - -0.5 3,390,588 - +0.1 3,390,588 - -1.0 3,390,588 - -0.6 3,390,592 - -0.7 3,390,592 - +0.4 3,390,592 - -0.6 3,390,592 - +0.4 3,390,592 - +0.5 3,390,594 - -0.3 3,390,594 - +0.3 3,390,594 - +0.6 3,390,594 - +0.9 3,390,612 - -1.4 3,390,612 - -0.3 3,390,617 - +0.5 3,390,617 - +0.3 3,390,617 - -1.0 3,390,617 - +0.2 3,390,667 + -1.1 3,390,667 + -1.3 3,390,667 + -0.2 3,390,667 + -0.3 3,390,667 + +1.7 3,390,667 + +1.2 3,390,667 + +0.3 3,390,668 - +0.1 3,390,668 - +0.4 3,390,668 - +0.2 3,390,668 - +0.1 3,390,668 - +0.4 3,390,668 - +1.0 3,390,668 - +0.1 3,390,668 - +0.7 3,390,686 + +0.7 3,390,687 - -0.3 3,390,687 - +0.2 3,390,687 - -0.2 3,391,854 - -0.5 3,392,054 + +0.1 3,392,054 + -0.6 3,392,055 - -0.1 3,392,070 + +0.4 3,392,095 + -0.3 3,392,104 + +0.1 3,392,105 - -0.8 3,392,127 + -0.2 3,392,127 + -0.2 3,392,128 - +0.3 3,392,128 - -0.6 3,392,182 + -0.4 3,392,182 + -0.5 3,392,182 + +2.5 3,392,183 - +0.7 3,392,183 - +0.4 3,392,183 - -0.4 3,392,183 - -0.6 3,392,183 - -0.4 3,392,183 - +0.3 3,392,186 + -0.2 3,392,186 + +0.9 3,392,187 - -0.6 3,392,187 - -0.7 3,392,187 - -0.7 3,392,202 + -0.1 3,392,202 + -0.3 3,392,202 + +0.8 3,392,202 + +0.5 3,392,202 + -0.7 3,392,202 + -0.5 3,392,202 + -0.1 3,392,202 + +0.7 3,392,203 - +0.4 3,392,215 - +0.6 3,392,298 + +1.7 3,392,298 + -1.6 3,392,298 + -1.5 3,392,298 + -0.8 3,392,298 + +0.7 3,392,298 + +0.1 3,392,298 + -0.2 3,392,298 + +0.5 3,392,298 + +0.0 3,392,298 + +0.9 3,392,298 + +0.2 3,392,299 - +1.1 3,392,299 - -0.8 3,392,299 - -1.4 3,392,299 - -1.7 3,392,299 - -0.4 3,392,299 - +0.1 3,392,299 - +0.7 3,392,299 - +0.2 3,392,299 - -0.3 3,392,299 - -0.2 3,392,299 - +0.4 3,392,299 - +0.2 3,392,318 - +0.1 3,392,532 - AO356_15005 0.29 +0.3 3,392,532 - AO356_15005 0.29 -1.3 3,392,565 + AO356_15005 0.33 -0.4 3,392,565 + AO356_15005 0.33 -0.1 3,392,565 + AO356_15005 0.33 -0.0 3,392,565 + AO356_15005 0.33 +0.4 3,392,565 + AO356_15005 0.33 -0.3 3,392,566 - AO356_15005 0.34 -0.8 3,392,566 - AO356_15005 0.34 -0.6 3,392,566 - AO356_15005 0.34 +0.1 3,392,598 + AO356_15005 0.38 -0.3 3,392,599 - AO356_15005 0.38 +0.2 3,392,599 - AO356_15005 0.38 +0.5 3,392,673 + AO356_15005 0.47 +0.3 3,392,673 + AO356_15005 0.47 -0.0 3,392,673 + AO356_15005 0.47 -0.9 3,392,673 + AO356_15005 0.47 -1.2 3,392,673 + AO356_15005 0.47 -0.6 3,392,673 + AO356_15005 0.47 -0.4 3,392,673 + AO356_15005 0.47 +0.2 3,392,673 + AO356_15005 0.47 -0.3 3,392,674 - AO356_15005 0.47 -0.6 3,392,674 - AO356_15005 0.47 +0.2 3,392,756 + AO356_15005 0.58 -0.8 3,392,757 - AO356_15005 0.58 -0.0
Or see this region's nucleotide sequence