Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14380 and AO356_14385 are separated by 346 nucleotides AO356_14385 and AO356_14390 are separated by 49 nucleotides
AO356_14380: AO356_14380 - transcriptional regulator, at 3,271,510 to 3,272,139
_14380
AO356_14385: AO356_14385 - spermidine/putrescine ABC transporter ATP-binding protein, at 3,272,486 to 3,273,610
_14385
AO356_14390: AO356_14390 - spermidine/putrescine ABC transporter substrate-binding protein, at 3,273,660 to 3,274,703
_14390
Position (kb)
3272
3273
3274 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.520 kb on + strand at 3271.520 kb on + strand at 3271.521 kb on - strand at 3271.879 kb on + strand, within AO356_14380 at 3271.880 kb on - strand, within AO356_14380 at 3271.880 kb on - strand, within AO356_14380 at 3272.113 kb on + strand at 3272.114 kb on - strand at 3272.114 kb on - strand at 3272.114 kb on - strand at 3272.263 kb on + strand at 3272.263 kb on + strand at 3272.264 kb on - strand at 3272.302 kb on + strand at 3272.302 kb on + strand at 3272.302 kb on + strand at 3272.302 kb on + strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.339 kb on + strand at 3272.339 kb on + strand at 3272.340 kb on - strand at 3272.360 kb on + strand at 3272.360 kb on + strand at 3272.361 kb on - strand at 3272.443 kb on + strand at 3272.443 kb on + strand at 3272.444 kb on - strand at 3272.444 kb on - strand at 3272.486 kb on - strand at 3272.486 kb on - strand at 3272.555 kb on + strand at 3272.555 kb on + strand at 3272.555 kb on + strand at 3272.556 kb on - strand at 3272.556 kb on - strand at 3272.556 kb on - strand at 3272.556 kb on - strand at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3273.086 kb on + strand, within AO356_14385 at 3273.086 kb on + strand, within AO356_14385 at 3273.087 kb on - strand, within AO356_14385 at 3273.087 kb on - strand, within AO356_14385 at 3273.087 kb on - strand, within AO356_14385 at 3273.185 kb on + strand, within AO356_14385 at 3273.185 kb on + strand, within AO356_14385 at 3273.185 kb on + strand, within AO356_14385 at 3273.185 kb on + strand, within AO356_14385 at 3273.186 kb on - strand, within AO356_14385 at 3273.186 kb on - strand, within AO356_14385 at 3273.186 kb on - strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.440 kb on + strand, within AO356_14385 at 3273.441 kb on - strand, within AO356_14385 at 3273.441 kb on - strand, within AO356_14385 at 3273.598 kb on - strand at 3273.624 kb on + strand at 3273.624 kb on + strand at 3273.624 kb on + strand at 3273.624 kb on + strand at 3273.625 kb on - strand at 3273.625 kb on - strand at 3273.657 kb on + strand at 3273.657 kb on + strand at 3273.657 kb on + strand at 3273.657 kb on + strand at 3273.657 kb on + strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.658 kb on - strand at 3273.792 kb on + strand, within AO356_14390 at 3273.793 kb on - strand, within AO356_14390 at 3273.841 kb on - strand, within AO356_14390 at 3273.841 kb on - strand, within AO356_14390 at 3273.841 kb on - strand, within AO356_14390 at 3273.993 kb on + strand, within AO356_14390 at 3273.993 kb on + strand, within AO356_14390 at 3273.993 kb on + strand, within AO356_14390 at 3273.994 kb on - strand, within AO356_14390 at 3274.025 kb on - strand, within AO356_14390 at 3274.155 kb on + strand, within AO356_14390 at 3274.155 kb on + strand, within AO356_14390 at 3274.155 kb on + strand, within AO356_14390 at 3274.155 kb on + strand, within AO356_14390 at 3274.155 kb on + strand, within AO356_14390 at 3274.155 kb on + strand, within AO356_14390 at 3274.156 kb on - strand, within AO356_14390 at 3274.156 kb on - strand, within AO356_14390 at 3274.156 kb on - strand, within AO356_14390 at 3274.207 kb on - strand, within AO356_14390 at 3274.207 kb on - strand, within AO356_14390 at 3274.274 kb on + strand, within AO356_14390 at 3274.311 kb on + strand, within AO356_14390 at 3274.312 kb on - strand, within AO356_14390 at 3274.312 kb on - strand, within AO356_14390 at 3274.312 kb on - strand, within AO356_14390 at 3274.347 kb on + strand, within AO356_14390 at 3274.347 kb on + strand, within AO356_14390 at 3274.348 kb on - strand, within AO356_14390 at 3274.348 kb on - strand, within AO356_14390 at 3274.348 kb on - strand, within AO356_14390 at 3274.410 kb on - strand, within AO356_14390 at 3274.413 kb on + strand, within AO356_14390 at 3274.413 kb on + strand, within AO356_14390 at 3274.413 kb on + strand, within AO356_14390 at 3274.414 kb on - strand, within AO356_14390 at 3274.518 kb on + strand, within AO356_14390 at 3274.519 kb on - strand, within AO356_14390
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,271,506 + -1.5 3,271,506 + -0.0 3,271,506 + -0.9 3,271,506 + -0.1 3,271,506 + +0.2 3,271,506 + +0.9 3,271,506 + +1.2 3,271,506 + +0.5 3,271,506 + -0.7 3,271,507 - +0.7 3,271,507 - +0.1 3,271,507 - -0.4 3,271,507 - -0.5 3,271,507 - +0.0 3,271,507 - -0.7 3,271,507 - -0.7 3,271,507 - -0.8 3,271,507 - -0.5 3,271,520 + +0.6 3,271,520 + -0.1 3,271,521 - +0.1 3,271,879 + AO356_14380 0.59 +0.4 3,271,880 - AO356_14380 0.59 -0.6 3,271,880 - AO356_14380 0.59 -0.1 3,272,113 + -0.6 3,272,114 - -0.4 3,272,114 - +0.1 3,272,114 - +0.1 3,272,263 + +0.0 3,272,263 + +0.5 3,272,264 - +0.8 3,272,302 + +1.4 3,272,302 + -0.3 3,272,302 + +0.6 3,272,302 + +0.4 3,272,303 - -0.0 3,272,303 - +0.2 3,272,303 - -1.1 3,272,303 - +0.6 3,272,303 - +0.3 3,272,339 + -0.2 3,272,339 + +1.0 3,272,340 - -0.7 3,272,360 + +1.7 3,272,360 + +1.4 3,272,361 - +1.7 3,272,443 + +3.8 3,272,443 + +4.9 3,272,444 - -0.2 3,272,444 - -0.0 3,272,486 - -0.0 3,272,486 - +1.0 3,272,555 + +0.0 3,272,555 + +0.7 3,272,555 + -0.1 3,272,556 - -0.0 3,272,556 - -1.3 3,272,556 - -0.5 3,272,556 - -1.4 3,272,771 + AO356_14385 0.25 -0.3 3,272,771 + AO356_14385 0.25 -0.2 3,272,771 + AO356_14385 0.25 +0.1 3,272,771 + AO356_14385 0.25 -2.7 3,272,771 + AO356_14385 0.25 +0.2 3,272,772 - AO356_14385 0.25 -0.6 3,272,772 - AO356_14385 0.25 +0.1 3,272,772 - AO356_14385 0.25 -0.6 3,272,772 - AO356_14385 0.25 -0.2 3,273,086 + AO356_14385 0.53 -0.6 3,273,086 + AO356_14385 0.53 -0.0 3,273,087 - AO356_14385 0.53 +0.1 3,273,087 - AO356_14385 0.53 +1.3 3,273,087 - AO356_14385 0.53 -0.6 3,273,185 + AO356_14385 0.62 -0.2 3,273,185 + AO356_14385 0.62 -0.0 3,273,185 + AO356_14385 0.62 -0.7 3,273,185 + AO356_14385 0.62 +0.1 3,273,186 - AO356_14385 0.62 +1.5 3,273,186 - AO356_14385 0.62 -1.2 3,273,186 - AO356_14385 0.62 -0.2 3,273,440 + AO356_14385 0.85 -0.5 3,273,440 + AO356_14385 0.85 -0.7 3,273,440 + AO356_14385 0.85 +1.0 3,273,440 + AO356_14385 0.85 +0.3 3,273,440 + AO356_14385 0.85 -0.5 3,273,440 + AO356_14385 0.85 +0.4 3,273,440 + AO356_14385 0.85 +0.7 3,273,441 - AO356_14385 0.85 +0.8 3,273,441 - AO356_14385 0.85 +0.9 3,273,598 - +0.1 3,273,624 + +0.4 3,273,624 + +1.7 3,273,624 + +2.1 3,273,624 + +2.7 3,273,625 - -0.1 3,273,625 - -0.4 3,273,657 + +0.3 3,273,657 + +0.2 3,273,657 + -0.3 3,273,657 + +0.2 3,273,657 + +0.1 3,273,658 - -0.8 3,273,658 - +0.6 3,273,658 - -0.0 3,273,658 - -0.1 3,273,658 - +0.8 3,273,658 - -0.7 3,273,658 - +0.1 3,273,658 - -0.7 3,273,658 - +0.2 3,273,658 - +0.3 3,273,792 + AO356_14390 0.13 -1.0 3,273,793 - AO356_14390 0.13 +0.3 3,273,841 - AO356_14390 0.17 +1.2 3,273,841 - AO356_14390 0.17 -0.1 3,273,841 - AO356_14390 0.17 -0.8 3,273,993 + AO356_14390 0.32 +1.2 3,273,993 + AO356_14390 0.32 +0.2 3,273,993 + AO356_14390 0.32 -0.4 3,273,994 - AO356_14390 0.32 -0.2 3,274,025 - AO356_14390 0.35 -0.9 3,274,155 + AO356_14390 0.47 +0.9 3,274,155 + AO356_14390 0.47 -0.9 3,274,155 + AO356_14390 0.47 +1.5 3,274,155 + AO356_14390 0.47 -0.4 3,274,155 + AO356_14390 0.47 -0.3 3,274,155 + AO356_14390 0.47 +0.9 3,274,156 - AO356_14390 0.48 -0.1 3,274,156 - AO356_14390 0.48 +0.1 3,274,156 - AO356_14390 0.48 -0.1 3,274,207 - AO356_14390 0.52 +0.1 3,274,207 - AO356_14390 0.52 +0.8 3,274,274 + AO356_14390 0.59 -2.1 3,274,311 + AO356_14390 0.62 +2.0 3,274,312 - AO356_14390 0.62 +1.1 3,274,312 - AO356_14390 0.62 -0.2 3,274,312 - AO356_14390 0.62 +0.2 3,274,347 + AO356_14390 0.66 -1.2 3,274,347 + AO356_14390 0.66 +0.5 3,274,348 - AO356_14390 0.66 -0.2 3,274,348 - AO356_14390 0.66 -1.8 3,274,348 - AO356_14390 0.66 +0.3 3,274,410 - AO356_14390 0.72 +0.4 3,274,413 + AO356_14390 0.72 -1.3 3,274,413 + AO356_14390 0.72 -0.1 3,274,413 + AO356_14390 0.72 +0.3 3,274,414 - AO356_14390 0.72 -0.1 3,274,518 + AO356_14390 0.82 -0.1 3,274,519 - AO356_14390 0.82 +0.3
Or see this region's nucleotide sequence