Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14375 and AO356_14380 are separated by 121 nucleotides AO356_14380 and AO356_14385 are separated by 346 nucleotides
AO356_14375: AO356_14375 - histidine kinase, at 3,268,992 to 3,271,388
_14375
AO356_14380: AO356_14380 - transcriptional regulator, at 3,271,510 to 3,272,139
_14380
AO356_14385: AO356_14385 - spermidine/putrescine ABC transporter ATP-binding protein, at 3,272,486 to 3,273,610
_14385
Position (kb)
3271
3272
3273 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3270.669 kb on + strand, within AO356_14375 at 3270.669 kb on + strand, within AO356_14375 at 3270.669 kb on + strand, within AO356_14375 at 3270.669 kb on + strand, within AO356_14375 at 3270.669 kb on + strand, within AO356_14375 at 3270.670 kb on - strand, within AO356_14375 at 3270.670 kb on - strand, within AO356_14375 at 3270.670 kb on - strand, within AO356_14375 at 3270.670 kb on - strand, within AO356_14375 at 3270.670 kb on - strand, within AO356_14375 at 3270.879 kb on + strand, within AO356_14375 at 3270.879 kb on + strand, within AO356_14375 at 3270.880 kb on - strand, within AO356_14375 at 3270.880 kb on - strand, within AO356_14375 at 3270.914 kb on + strand, within AO356_14375 at 3270.915 kb on - strand, within AO356_14375 at 3270.915 kb on - strand, within AO356_14375 at 3270.915 kb on - strand, within AO356_14375 at 3271.172 kb on + strand at 3271.172 kb on + strand at 3271.173 kb on - strand at 3271.173 kb on - strand at 3271.173 kb on - strand at 3271.210 kb on + strand at 3271.210 kb on + strand at 3271.210 kb on + strand at 3271.210 kb on + strand at 3271.210 kb on + strand at 3271.210 kb on + strand at 3271.211 kb on - strand at 3271.211 kb on - strand at 3271.211 kb on - strand at 3271.211 kb on - strand at 3271.211 kb on - strand at 3271.211 kb on - strand at 3271.237 kb on + strand at 3271.238 kb on - strand at 3271.244 kb on + strand at 3271.244 kb on + strand at 3271.244 kb on + strand at 3271.245 kb on - strand at 3271.451 kb on + strand at 3271.451 kb on + strand at 3271.451 kb on + strand at 3271.451 kb on + strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.452 kb on - strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.506 kb on + strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.507 kb on - strand at 3271.520 kb on + strand at 3271.520 kb on + strand at 3271.521 kb on - strand at 3271.879 kb on + strand, within AO356_14380 at 3271.880 kb on - strand, within AO356_14380 at 3271.880 kb on - strand, within AO356_14380 at 3272.113 kb on + strand at 3272.114 kb on - strand at 3272.114 kb on - strand at 3272.114 kb on - strand at 3272.263 kb on + strand at 3272.263 kb on + strand at 3272.264 kb on - strand at 3272.302 kb on + strand at 3272.302 kb on + strand at 3272.302 kb on + strand at 3272.302 kb on + strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.303 kb on - strand at 3272.339 kb on + strand at 3272.339 kb on + strand at 3272.340 kb on - strand at 3272.360 kb on + strand at 3272.360 kb on + strand at 3272.361 kb on - strand at 3272.443 kb on + strand at 3272.443 kb on + strand at 3272.444 kb on - strand at 3272.444 kb on - strand at 3272.486 kb on - strand at 3272.486 kb on - strand at 3272.555 kb on + strand at 3272.555 kb on + strand at 3272.555 kb on + strand at 3272.556 kb on - strand at 3272.556 kb on - strand at 3272.556 kb on - strand at 3272.556 kb on - strand at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.771 kb on + strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3272.772 kb on - strand, within AO356_14385 at 3273.086 kb on + strand, within AO356_14385 at 3273.086 kb on + strand, within AO356_14385 at 3273.087 kb on - strand, within AO356_14385 at 3273.087 kb on - strand, within AO356_14385 at 3273.087 kb on - strand, within AO356_14385
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,270,669 + AO356_14375 0.70 +4.7 3,270,669 + AO356_14375 0.70 +5.6 3,270,669 + AO356_14375 0.70 +4.2 3,270,669 + AO356_14375 0.70 +6.0 3,270,669 + AO356_14375 0.70 +4.9 3,270,670 - AO356_14375 0.70 +0.7 3,270,670 - AO356_14375 0.70 -0.2 3,270,670 - AO356_14375 0.70 -0.2 3,270,670 - AO356_14375 0.70 +0.2 3,270,670 - AO356_14375 0.70 -0.5 3,270,879 + AO356_14375 0.79 +4.6 3,270,879 + AO356_14375 0.79 +5.2 3,270,880 - AO356_14375 0.79 -0.7 3,270,880 - AO356_14375 0.79 -0.4 3,270,914 + AO356_14375 0.80 +5.4 3,270,915 - AO356_14375 0.80 -1.0 3,270,915 - AO356_14375 0.80 +0.0 3,270,915 - AO356_14375 0.80 +0.6 3,271,172 + +6.1 3,271,172 + +5.8 3,271,173 - +1.8 3,271,173 - +1.5 3,271,173 - +0.2 3,271,210 + +4.3 3,271,210 + +5.4 3,271,210 + +5.3 3,271,210 + +5.1 3,271,210 + +6.3 3,271,210 + +4.7 3,271,211 - -1.4 3,271,211 - +0.2 3,271,211 - +0.4 3,271,211 - -0.8 3,271,211 - -0.8 3,271,211 - -0.2 3,271,237 + +4.7 3,271,238 - +0.7 3,271,244 + +5.4 3,271,244 + +5.2 3,271,244 + +6.4 3,271,245 - -0.7 3,271,451 + -0.5 3,271,451 + -0.0 3,271,451 + +0.2 3,271,451 + +0.3 3,271,452 - -1.2 3,271,452 - -0.1 3,271,452 - -0.8 3,271,452 - +0.4 3,271,452 - -0.1 3,271,452 - -1.7 3,271,452 - +0.2 3,271,452 - -1.4 3,271,506 + -1.5 3,271,506 + -0.0 3,271,506 + -0.9 3,271,506 + -0.1 3,271,506 + +0.2 3,271,506 + +0.9 3,271,506 + +1.2 3,271,506 + +0.5 3,271,506 + -0.7 3,271,507 - +0.7 3,271,507 - +0.1 3,271,507 - -0.4 3,271,507 - -0.5 3,271,507 - +0.0 3,271,507 - -0.7 3,271,507 - -0.7 3,271,507 - -0.8 3,271,507 - -0.5 3,271,520 + +0.6 3,271,520 + -0.1 3,271,521 - +0.1 3,271,879 + AO356_14380 0.59 +0.4 3,271,880 - AO356_14380 0.59 -0.6 3,271,880 - AO356_14380 0.59 -0.1 3,272,113 + -0.6 3,272,114 - -0.4 3,272,114 - +0.1 3,272,114 - +0.1 3,272,263 + +0.0 3,272,263 + +0.5 3,272,264 - +0.8 3,272,302 + +1.4 3,272,302 + -0.3 3,272,302 + +0.6 3,272,302 + +0.4 3,272,303 - -0.0 3,272,303 - +0.2 3,272,303 - -1.1 3,272,303 - +0.6 3,272,303 - +0.3 3,272,339 + -0.2 3,272,339 + +1.0 3,272,340 - -0.7 3,272,360 + +1.7 3,272,360 + +1.4 3,272,361 - +1.7 3,272,443 + +3.8 3,272,443 + +4.9 3,272,444 - -0.2 3,272,444 - -0.0 3,272,486 - -0.0 3,272,486 - +1.0 3,272,555 + +0.0 3,272,555 + +0.7 3,272,555 + -0.1 3,272,556 - -0.0 3,272,556 - -1.3 3,272,556 - -0.5 3,272,556 - -1.4 3,272,771 + AO356_14385 0.25 -0.3 3,272,771 + AO356_14385 0.25 -0.2 3,272,771 + AO356_14385 0.25 +0.1 3,272,771 + AO356_14385 0.25 -2.7 3,272,771 + AO356_14385 0.25 +0.2 3,272,772 - AO356_14385 0.25 -0.6 3,272,772 - AO356_14385 0.25 +0.1 3,272,772 - AO356_14385 0.25 -0.6 3,272,772 - AO356_14385 0.25 -0.2 3,273,086 + AO356_14385 0.53 -0.6 3,273,086 + AO356_14385 0.53 -0.0 3,273,087 - AO356_14385 0.53 +0.1 3,273,087 - AO356_14385 0.53 +1.3 3,273,087 - AO356_14385 0.53 -0.6
Or see this region's nucleotide sequence