Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14360 and AO356_14365 are separated by 1 nucleotides AO356_14365 and AO356_14370 are separated by 195 nucleotides AO356_14370 and AO356_14375 are separated by 74 nucleotides
AO356_14360: AO356_14360 - mannose-1-phosphate guanylyltransferase, at 3,266,289 to 3,266,960
_14360
AO356_14365: AO356_14365 - molecular chaperone DnaJ, at 3,266,962 to 3,267,729
_14365
AO356_14370: AO356_14370 - hydrolase or acyltransferase, at 3,267,925 to 3,268,917
_14370
AO356_14375: AO356_14375 - histidine kinase, at 3,268,992 to 3,271,388
_14375
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3266.944 kb on + strand at 3266.944 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.961 kb on + strand at 3266.962 kb on - strand at 3266.962 kb on - strand at 3266.962 kb on - strand at 3267.146 kb on + strand, within AO356_14365 at 3267.146 kb on + strand, within AO356_14365 at 3267.147 kb on - strand, within AO356_14365 at 3267.307 kb on + strand, within AO356_14365 at 3267.308 kb on - strand, within AO356_14365 at 3267.308 kb on - strand, within AO356_14365 at 3267.308 kb on - strand, within AO356_14365 at 3267.478 kb on + strand, within AO356_14365 at 3267.478 kb on + strand, within AO356_14365 at 3267.479 kb on - strand, within AO356_14365 at 3267.520 kb on + strand, within AO356_14365 at 3267.521 kb on - strand, within AO356_14365 at 3267.688 kb on - strand at 3267.742 kb on + strand at 3267.742 kb on + strand at 3267.742 kb on + strand at 3267.742 kb on + strand at 3267.742 kb on + strand at 3267.743 kb on - strand at 3267.743 kb on - strand at 3267.743 kb on - strand at 3267.754 kb on + strand at 3267.755 kb on - strand at 3267.755 kb on - strand at 3267.776 kb on + strand at 3267.777 kb on - strand at 3267.777 kb on - strand at 3267.777 kb on - strand at 3267.794 kb on + strand at 3267.794 kb on + strand at 3267.795 kb on - strand at 3267.876 kb on + strand at 3267.877 kb on - strand at 3267.897 kb on + strand at 3267.897 kb on + strand at 3267.897 kb on + strand at 3267.926 kb on + strand at 3267.926 kb on + strand at 3267.926 kb on + strand at 3267.927 kb on - strand at 3267.927 kb on - strand at 3268.103 kb on + strand, within AO356_14370 at 3268.103 kb on + strand, within AO356_14370 at 3268.103 kb on + strand, within AO356_14370 at 3268.104 kb on - strand, within AO356_14370 at 3268.104 kb on - strand, within AO356_14370 at 3268.110 kb on + strand, within AO356_14370 at 3268.232 kb on + strand, within AO356_14370 at 3268.232 kb on + strand, within AO356_14370 at 3268.232 kb on + strand, within AO356_14370 at 3268.232 kb on + strand, within AO356_14370 at 3268.248 kb on - strand, within AO356_14370 at 3268.270 kb on + strand, within AO356_14370 at 3268.270 kb on + strand, within AO356_14370 at 3268.278 kb on + strand, within AO356_14370 at 3268.279 kb on - strand, within AO356_14370 at 3268.304 kb on + strand, within AO356_14370 at 3268.542 kb on + strand, within AO356_14370 at 3268.542 kb on + strand, within AO356_14370 at 3268.543 kb on - strand, within AO356_14370 at 3268.663 kb on - strand, within AO356_14370 at 3268.767 kb on + strand, within AO356_14370 at 3268.768 kb on - strand, within AO356_14370 at 3268.877 kb on - strand at 3268.939 kb on + strand at 3268.939 kb on + strand at 3268.940 kb on - strand at 3268.940 kb on - strand at 3268.953 kb on + strand at 3268.968 kb on + strand at 3268.969 kb on - strand at 3268.969 kb on - strand at 3268.969 kb on - strand at 3268.969 kb on - strand at 3268.969 kb on - strand at 3268.969 kb on - strand at 3269.157 kb on + strand at 3269.157 kb on + strand at 3269.157 kb on + strand at 3269.157 kb on + strand at 3269.166 kb on + strand at 3269.167 kb on - strand at 3269.167 kb on - strand at 3269.370 kb on + strand, within AO356_14375 at 3269.370 kb on + strand, within AO356_14375 at 3269.370 kb on + strand, within AO356_14375 at 3269.370 kb on + strand, within AO356_14375 at 3269.370 kb on + strand, within AO356_14375 at 3269.371 kb on - strand, within AO356_14375 at 3269.371 kb on - strand, within AO356_14375 at 3269.487 kb on + strand, within AO356_14375 at 3269.488 kb on - strand, within AO356_14375 at 3269.488 kb on - strand, within AO356_14375 at 3269.791 kb on - strand, within AO356_14375 at 3269.791 kb on - strand, within AO356_14375
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,266,944 + +0.3 3,266,944 + +0.2 3,266,961 + +0.2 3,266,961 + -1.0 3,266,961 + -0.3 3,266,961 + +0.9 3,266,961 + +0.1 3,266,961 + -2.5 3,266,961 + +1.2 3,266,961 + +0.0 3,266,962 - -0.6 3,266,962 - -2.5 3,266,962 - +0.4 3,267,146 + AO356_14365 0.24 -2.4 3,267,146 + AO356_14365 0.24 +0.5 3,267,147 - AO356_14365 0.24 +0.6 3,267,307 + AO356_14365 0.45 +0.9 3,267,308 - AO356_14365 0.45 +0.1 3,267,308 - AO356_14365 0.45 -0.2 3,267,308 - AO356_14365 0.45 -0.2 3,267,478 + AO356_14365 0.67 +0.7 3,267,478 + AO356_14365 0.67 -0.7 3,267,479 - AO356_14365 0.67 +0.4 3,267,520 + AO356_14365 0.73 -0.0 3,267,521 - AO356_14365 0.73 +0.2 3,267,688 - -0.1 3,267,742 + +0.2 3,267,742 + +1.4 3,267,742 + +1.0 3,267,742 + +0.5 3,267,742 + -1.6 3,267,743 - -0.9 3,267,743 - -1.0 3,267,743 - +0.2 3,267,754 + -2.6 3,267,755 - -1.1 3,267,755 - -0.1 3,267,776 + +0.3 3,267,777 - -0.1 3,267,777 - -0.9 3,267,777 - -0.2 3,267,794 + +0.8 3,267,794 + +1.0 3,267,795 - -0.2 3,267,876 + +1.3 3,267,877 - +0.9 3,267,897 + +0.5 3,267,897 + -0.0 3,267,897 + -0.0 3,267,926 + -0.1 3,267,926 + +0.7 3,267,926 + +0.3 3,267,927 - +0.5 3,267,927 - -0.6 3,268,103 + AO356_14370 0.18 -0.4 3,268,103 + AO356_14370 0.18 +0.0 3,268,103 + AO356_14370 0.18 +0.2 3,268,104 - AO356_14370 0.18 -0.8 3,268,104 - AO356_14370 0.18 -1.1 3,268,110 + AO356_14370 0.19 +0.1 3,268,232 + AO356_14370 0.31 +1.5 3,268,232 + AO356_14370 0.31 +1.1 3,268,232 + AO356_14370 0.31 +1.8 3,268,232 + AO356_14370 0.31 +0.5 3,268,248 - AO356_14370 0.33 +0.6 3,268,270 + AO356_14370 0.35 +0.2 3,268,270 + AO356_14370 0.35 +0.9 3,268,278 + AO356_14370 0.36 +0.4 3,268,279 - AO356_14370 0.36 -1.8 3,268,304 + AO356_14370 0.38 +0.1 3,268,542 + AO356_14370 0.62 +1.1 3,268,542 + AO356_14370 0.62 +1.2 3,268,543 - AO356_14370 0.62 -0.6 3,268,663 - AO356_14370 0.74 -0.8 3,268,767 + AO356_14370 0.85 +0.8 3,268,768 - AO356_14370 0.85 +0.3 3,268,877 - -0.0 3,268,939 + -0.2 3,268,939 + +0.2 3,268,940 - -0.1 3,268,940 - +0.6 3,268,953 + -0.2 3,268,968 + +0.9 3,268,969 - -0.7 3,268,969 - -0.1 3,268,969 - +0.0 3,268,969 - +0.3 3,268,969 - +0.5 3,268,969 - +0.3 3,269,157 + +1.4 3,269,157 + -0.1 3,269,157 + +0.8 3,269,157 + +2.3 3,269,166 + +1.3 3,269,167 - +1.0 3,269,167 - -0.5 3,269,370 + AO356_14375 0.16 +3.5 3,269,370 + AO356_14375 0.16 +1.5 3,269,370 + AO356_14375 0.16 +2.9 3,269,370 + AO356_14375 0.16 +2.6 3,269,370 + AO356_14375 0.16 +3.8 3,269,371 - AO356_14375 0.16 +1.2 3,269,371 - AO356_14375 0.16 +0.4 3,269,487 + AO356_14375 0.21 +2.2 3,269,488 - AO356_14375 0.21 +0.6 3,269,488 - AO356_14375 0.21 +0.4 3,269,791 - AO356_14375 0.33 +0.2 3,269,791 - AO356_14375 0.33 -0.7
Or see this region's nucleotide sequence