Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07725 and AO356_07730 are separated by 21 nucleotides AO356_07730 and AO356_07735 are separated by 359 nucleotides
AO356_07725: AO356_07725 - diguanylate cyclase, at 1,715,615 to 1,717,129
_07725
AO356_07730: AO356_07730 - hypothetical protein, at 1,717,151 to 1,717,741
_07730
AO356_07735: AO356_07735 - hydroperoxidase, at 1,718,101 to 1,720,365
_07735
Position (kb)
1717
1718 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1716.296 kb on - strand, within AO356_07725 at 1716.296 kb on - strand, within AO356_07725 at 1716.312 kb on + strand, within AO356_07725 at 1716.312 kb on + strand, within AO356_07725 at 1716.393 kb on + strand, within AO356_07725 at 1716.393 kb on + strand, within AO356_07725 at 1716.394 kb on - strand, within AO356_07725 at 1716.394 kb on - strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.469 kb on - strand, within AO356_07725 at 1716.469 kb on - strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.551 kb on + strand, within AO356_07725 at 1716.551 kb on + strand, within AO356_07725 at 1716.665 kb on + strand, within AO356_07725 at 1716.665 kb on + strand, within AO356_07725 at 1716.665 kb on + strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.666 kb on - strand, within AO356_07725 at 1716.804 kb on - strand, within AO356_07725 at 1716.804 kb on - strand, within AO356_07725 at 1716.804 kb on - strand, within AO356_07725 at 1716.822 kb on - strand, within AO356_07725 at 1716.822 kb on - strand, within AO356_07725 at 1716.822 kb on - strand, within AO356_07725 at 1716.893 kb on + strand, within AO356_07725 at 1716.893 kb on + strand, within AO356_07725 at 1716.893 kb on + strand, within AO356_07725 at 1716.893 kb on + strand, within AO356_07725 at 1716.893 kb on + strand, within AO356_07725 at 1716.894 kb on - strand, within AO356_07725 at 1716.894 kb on - strand, within AO356_07725 at 1716.894 kb on - strand, within AO356_07725 at 1716.894 kb on - strand, within AO356_07725 at 1716.894 kb on - strand, within AO356_07725 at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.980 kb on + strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.981 kb on - strand at 1716.982 kb on + strand at 1717.031 kb on + strand at 1717.031 kb on + strand at 1717.031 kb on + strand at 1717.034 kb on + strand at 1717.034 kb on + strand at 1717.034 kb on + strand at 1717.043 kb on + strand at 1717.044 kb on - strand at 1717.051 kb on + strand at 1717.051 kb on + strand at 1717.051 kb on + strand at 1717.563 kb on + strand, within AO356_07730 at 1717.564 kb on - strand, within AO356_07730 at 1717.564 kb on - strand, within AO356_07730 at 1717.645 kb on + strand, within AO356_07730 at 1717.665 kb on - strand, within AO356_07730 at 1717.772 kb on + strand at 1717.772 kb on + strand at 1717.772 kb on + strand at 1717.772 kb on + strand at 1717.773 kb on - strand at 1717.773 kb on - strand at 1717.773 kb on - strand at 1717.773 kb on - strand at 1717.800 kb on + strand at 1717.808 kb on + strand at 1717.828 kb on - strand at 1717.828 kb on - strand at 1717.828 kb on - strand at 1717.836 kb on + strand at 1717.836 kb on + strand at 1717.836 kb on + strand at 1717.837 kb on - strand at 1717.837 kb on - strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.839 kb on + strand at 1717.840 kb on - strand at 1717.840 kb on - strand at 1717.840 kb on - strand at 1717.840 kb on - strand at 1717.840 kb on - strand at 1717.840 kb on - strand at 1717.840 kb on - strand at 1717.843 kb on + strand at 1717.843 kb on + strand at 1717.844 kb on - strand at 1717.844 kb on - strand at 1717.844 kb on - strand at 1717.861 kb on + strand at 1717.862 kb on - strand at 1717.882 kb on + strand at 1717.883 kb on - strand at 1717.911 kb on + strand at 1717.911 kb on + strand at 1717.912 kb on - strand at 1717.930 kb on + strand at 1717.931 kb on - strand at 1717.964 kb on + strand at 1717.964 kb on + strand at 1717.965 kb on - strand at 1718.031 kb on - strand at 1718.068 kb on + strand at 1718.080 kb on + strand at 1718.092 kb on + strand at 1718.093 kb on - strand at 1718.093 kb on - strand at 1718.093 kb on - strand at 1718.242 kb on + strand at 1718.242 kb on + strand at 1718.243 kb on - strand at 1718.345 kb on - strand, within AO356_07735 at 1718.515 kb on + strand, within AO356_07735 at 1718.515 kb on + strand, within AO356_07735 at 1718.515 kb on + strand, within AO356_07735 at 1718.516 kb on - strand, within AO356_07735 at 1718.516 kb on - strand, within AO356_07735 at 1718.516 kb on - strand, within AO356_07735 at 1718.645 kb on - strand, within AO356_07735
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 1,716,296 - AO356_07725 0.45 +0.1 1,716,296 - AO356_07725 0.45 +0.2 1,716,312 + AO356_07725 0.46 +1.7 1,716,312 + AO356_07725 0.46 -0.5 1,716,393 + AO356_07725 0.51 +0.1 1,716,393 + AO356_07725 0.51 -0.7 1,716,394 - AO356_07725 0.51 -0.1 1,716,394 - AO356_07725 0.51 -0.1 1,716,468 + AO356_07725 0.56 +1.4 1,716,468 + AO356_07725 0.56 +0.7 1,716,468 + AO356_07725 0.56 +0.5 1,716,469 - AO356_07725 0.56 -0.5 1,716,469 - AO356_07725 0.56 +1.1 1,716,545 + AO356_07725 0.61 +1.3 1,716,545 + AO356_07725 0.61 +1.0 1,716,545 + AO356_07725 0.61 -0.9 1,716,551 + AO356_07725 0.62 +0.4 1,716,551 + AO356_07725 0.62 -0.2 1,716,665 + AO356_07725 0.69 -0.2 1,716,665 + AO356_07725 0.69 -1.3 1,716,665 + AO356_07725 0.69 -0.6 1,716,666 - AO356_07725 0.69 -0.3 1,716,666 - AO356_07725 0.69 +0.2 1,716,666 - AO356_07725 0.69 -0.3 1,716,666 - AO356_07725 0.69 -0.3 1,716,666 - AO356_07725 0.69 -0.1 1,716,666 - AO356_07725 0.69 -0.9 1,716,666 - AO356_07725 0.69 +0.2 1,716,804 - AO356_07725 0.78 -0.8 1,716,804 - AO356_07725 0.78 -0.1 1,716,804 - AO356_07725 0.78 +0.1 1,716,822 - AO356_07725 0.80 +0.5 1,716,822 - AO356_07725 0.80 +0.6 1,716,822 - AO356_07725 0.80 +0.1 1,716,893 + AO356_07725 0.84 +0.2 1,716,893 + AO356_07725 0.84 +1.1 1,716,893 + AO356_07725 0.84 +0.0 1,716,893 + AO356_07725 0.84 -2.1 1,716,893 + AO356_07725 0.84 +0.4 1,716,894 - AO356_07725 0.84 -0.3 1,716,894 - AO356_07725 0.84 +0.2 1,716,894 - AO356_07725 0.84 -2.5 1,716,894 - AO356_07725 0.84 +0.1 1,716,894 - AO356_07725 0.84 +0.4 1,716,980 + -0.1 1,716,980 + -0.6 1,716,980 + -0.6 1,716,980 + -0.5 1,716,980 + -0.7 1,716,980 + +0.3 1,716,980 + +0.5 1,716,980 + +0.1 1,716,981 - -0.5 1,716,981 - -2.3 1,716,981 - +1.5 1,716,981 - +0.5 1,716,981 - -0.1 1,716,981 - +0.7 1,716,981 - +0.1 1,716,981 - -0.3 1,716,981 - -0.5 1,716,982 + -0.3 1,717,031 + +0.9 1,717,031 + -1.0 1,717,031 + -0.8 1,717,034 + -0.4 1,717,034 + -0.7 1,717,034 + +1.1 1,717,043 + +0.8 1,717,044 - -0.4 1,717,051 + -0.6 1,717,051 + +0.1 1,717,051 + -0.0 1,717,563 + AO356_07730 0.70 +0.1 1,717,564 - AO356_07730 0.70 +0.1 1,717,564 - AO356_07730 0.70 -1.9 1,717,645 + AO356_07730 0.84 +1.7 1,717,665 - AO356_07730 0.87 +1.1 1,717,772 + -0.1 1,717,772 + -0.9 1,717,772 + +0.5 1,717,772 + -0.4 1,717,773 - +0.7 1,717,773 - -2.1 1,717,773 - -0.4 1,717,773 - -0.1 1,717,800 + +0.7 1,717,808 + +0.1 1,717,828 - -0.4 1,717,828 - +0.6 1,717,828 - -1.1 1,717,836 + +1.1 1,717,836 + +1.0 1,717,836 + +0.1 1,717,837 - -0.0 1,717,837 - +0.7 1,717,839 + +0.1 1,717,839 + +0.1 1,717,839 + -0.0 1,717,839 + +0.9 1,717,839 + +0.5 1,717,839 + -1.4 1,717,839 + +0.7 1,717,839 + +0.1 1,717,840 - +0.1 1,717,840 - -0.1 1,717,840 - +0.5 1,717,840 - +0.9 1,717,840 - +0.4 1,717,840 - -0.6 1,717,840 - +0.4 1,717,843 + +0.5 1,717,843 + -0.4 1,717,844 - -0.6 1,717,844 - -0.0 1,717,844 - -0.9 1,717,861 + +0.4 1,717,862 - -0.0 1,717,882 + +0.8 1,717,883 - -0.7 1,717,911 + +0.3 1,717,911 + +0.2 1,717,912 - -0.5 1,717,930 + -0.4 1,717,931 - +0.1 1,717,964 + -0.4 1,717,964 + -0.3 1,717,965 - +0.6 1,718,031 - -0.4 1,718,068 + +0.4 1,718,080 + +0.5 1,718,092 + +0.5 1,718,093 - +0.9 1,718,093 - +0.5 1,718,093 - +0.7 1,718,242 + +2.0 1,718,242 + -0.5 1,718,243 - +1.4 1,718,345 - AO356_07735 0.11 -0.0 1,718,515 + AO356_07735 0.18 -0.3 1,718,515 + AO356_07735 0.18 +0.3 1,718,515 + AO356_07735 0.18 +0.6 1,718,516 - AO356_07735 0.18 -0.0 1,718,516 - AO356_07735 0.18 -0.4 1,718,516 - AO356_07735 0.18 +0.6 1,718,645 - AO356_07735 0.24 +0.5
Or see this region's nucleotide sequence