Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07710 and AO356_07715 overlap by 4 nucleotides AO356_07715 and AO356_07720 overlap by 4 nucleotides AO356_07720 and AO356_07725 are separated by 28 nucleotides
AO356_07710: AO356_07710 - nickel ABC transporter permease, at 1,712,778 to 1,713,635
_07710
AO356_07715: AO356_07715 - methionine ABC transporter ATP-binding protein, at 1,713,632 to 1,714,618
_07715
AO356_07720: AO356_07720 - ABC transporter ATP-binding protein, at 1,714,615 to 1,715,586
_07720
AO356_07725: AO356_07725 - diguanylate cyclase, at 1,715,615 to 1,717,129
_07725
Position (kb)
1714
1715
1716 Strain fitness (log2 ratio)
-1
0
1 at 1713.987 kb on + strand, within AO356_07715 at 1713.987 kb on + strand, within AO356_07715 at 1713.988 kb on - strand, within AO356_07715 at 1714.045 kb on - strand, within AO356_07715 at 1714.204 kb on - strand, within AO356_07715 at 1714.204 kb on - strand, within AO356_07715 at 1714.322 kb on + strand, within AO356_07715 at 1714.322 kb on + strand, within AO356_07715 at 1714.323 kb on - strand, within AO356_07715 at 1714.323 kb on - strand, within AO356_07715 at 1714.386 kb on - strand, within AO356_07715 at 1714.386 kb on - strand, within AO356_07715 at 1714.388 kb on - strand, within AO356_07715 at 1714.918 kb on + strand, within AO356_07720 at 1714.918 kb on + strand, within AO356_07720 at 1714.919 kb on - strand, within AO356_07720 at 1714.919 kb on - strand, within AO356_07720 at 1714.920 kb on + strand, within AO356_07720 at 1714.920 kb on + strand, within AO356_07720 at 1714.921 kb on - strand, within AO356_07720 at 1715.299 kb on + strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.601 kb on + strand at 1715.601 kb on + strand at 1715.767 kb on + strand, within AO356_07725 at 1715.768 kb on - strand, within AO356_07725 at 1715.796 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.881 kb on + strand, within AO356_07725 at 1715.882 kb on - strand, within AO356_07725 at 1715.882 kb on - strand, within AO356_07725 at 1715.892 kb on + strand, within AO356_07725 at 1715.892 kb on + strand, within AO356_07725 at 1715.892 kb on + strand, within AO356_07725 at 1715.893 kb on - strand, within AO356_07725 at 1715.996 kb on + strand, within AO356_07725 at 1715.997 kb on - strand, within AO356_07725 at 1715.997 kb on - strand, within AO356_07725 at 1715.997 kb on - strand, within AO356_07725 at 1716.146 kb on + strand, within AO356_07725 at 1716.146 kb on + strand, within AO356_07725 at 1716.146 kb on + strand, within AO356_07725 at 1716.147 kb on - strand, within AO356_07725 at 1716.147 kb on - strand, within AO356_07725 at 1716.147 kb on - strand, within AO356_07725 at 1716.296 kb on - strand, within AO356_07725 at 1716.296 kb on - strand, within AO356_07725 at 1716.312 kb on + strand, within AO356_07725 at 1716.312 kb on + strand, within AO356_07725 at 1716.393 kb on + strand, within AO356_07725 at 1716.393 kb on + strand, within AO356_07725 at 1716.394 kb on - strand, within AO356_07725 at 1716.394 kb on - strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.469 kb on - strand, within AO356_07725 at 1716.469 kb on - strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.551 kb on + strand, within AO356_07725 at 1716.551 kb on + strand, within AO356_07725
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 1,713,987 + AO356_07715 0.36 +0.0 1,713,987 + AO356_07715 0.36 -1.4 1,713,988 - AO356_07715 0.36 +0.1 1,714,045 - AO356_07715 0.42 -1.0 1,714,204 - AO356_07715 0.58 +0.8 1,714,204 - AO356_07715 0.58 -0.4 1,714,322 + AO356_07715 0.70 -0.1 1,714,322 + AO356_07715 0.70 -0.3 1,714,323 - AO356_07715 0.70 +0.1 1,714,323 - AO356_07715 0.70 -1.4 1,714,386 - AO356_07715 0.76 +0.6 1,714,386 - AO356_07715 0.76 -0.0 1,714,388 - AO356_07715 0.77 +0.1 1,714,918 + AO356_07720 0.31 +1.4 1,714,918 + AO356_07720 0.31 -0.2 1,714,919 - AO356_07720 0.31 -0.6 1,714,919 - AO356_07720 0.31 -0.8 1,714,920 + AO356_07720 0.31 +0.7 1,714,920 + AO356_07720 0.31 -0.7 1,714,921 - AO356_07720 0.31 -0.4 1,715,299 + AO356_07720 0.70 -0.4 1,715,300 - AO356_07720 0.70 +0.5 1,715,300 - AO356_07720 0.70 -1.3 1,715,300 - AO356_07720 0.70 +0.5 1,715,362 + AO356_07720 0.77 -0.8 1,715,362 + AO356_07720 0.77 +0.2 1,715,362 + AO356_07720 0.77 -0.5 1,715,362 + AO356_07720 0.77 +0.3 1,715,362 + AO356_07720 0.77 +0.1 1,715,363 - AO356_07720 0.77 +0.1 1,715,363 - AO356_07720 0.77 -1.3 1,715,363 - AO356_07720 0.77 -0.2 1,715,365 - AO356_07720 0.77 -0.4 1,715,365 - AO356_07720 0.77 +0.7 1,715,365 - AO356_07720 0.77 +0.3 1,715,556 + +0.3 1,715,556 + +0.6 1,715,556 + -0.6 1,715,556 + +0.1 1,715,556 + -0.7 1,715,556 + +0.2 1,715,556 + -0.9 1,715,556 + -0.2 1,715,556 + -0.1 1,715,557 - -0.1 1,715,557 - +0.0 1,715,557 - +0.7 1,715,557 - +0.7 1,715,557 - +0.1 1,715,557 - +0.3 1,715,557 - +0.5 1,715,557 - -0.2 1,715,557 - +0.2 1,715,557 - +0.4 1,715,557 - +0.9 1,715,601 + -0.2 1,715,601 + +1.0 1,715,767 + AO356_07725 0.10 -0.5 1,715,768 - AO356_07725 0.10 +0.5 1,715,796 + AO356_07725 0.12 -0.7 1,715,879 + AO356_07725 0.17 +0.5 1,715,879 + AO356_07725 0.17 +0.1 1,715,879 + AO356_07725 0.17 +0.1 1,715,879 + AO356_07725 0.17 +0.7 1,715,879 + AO356_07725 0.17 +0.6 1,715,880 - AO356_07725 0.17 -0.8 1,715,880 - AO356_07725 0.17 -0.7 1,715,880 - AO356_07725 0.17 +0.7 1,715,880 - AO356_07725 0.17 +0.4 1,715,880 - AO356_07725 0.17 -0.4 1,715,880 - AO356_07725 0.17 +0.1 1,715,880 - AO356_07725 0.17 +0.2 1,715,880 - AO356_07725 0.17 -0.3 1,715,881 + AO356_07725 0.18 -1.4 1,715,882 - AO356_07725 0.18 +0.5 1,715,882 - AO356_07725 0.18 +0.4 1,715,892 + AO356_07725 0.18 -0.3 1,715,892 + AO356_07725 0.18 -0.4 1,715,892 + AO356_07725 0.18 -0.1 1,715,893 - AO356_07725 0.18 -0.7 1,715,996 + AO356_07725 0.25 +0.6 1,715,997 - AO356_07725 0.25 -0.3 1,715,997 - AO356_07725 0.25 -0.7 1,715,997 - AO356_07725 0.25 -0.1 1,716,146 + AO356_07725 0.35 -0.1 1,716,146 + AO356_07725 0.35 -0.4 1,716,146 + AO356_07725 0.35 -0.1 1,716,147 - AO356_07725 0.35 +0.2 1,716,147 - AO356_07725 0.35 -0.1 1,716,147 - AO356_07725 0.35 +0.3 1,716,296 - AO356_07725 0.45 +0.1 1,716,296 - AO356_07725 0.45 +0.2 1,716,312 + AO356_07725 0.46 +1.7 1,716,312 + AO356_07725 0.46 -0.5 1,716,393 + AO356_07725 0.51 +0.1 1,716,393 + AO356_07725 0.51 -0.7 1,716,394 - AO356_07725 0.51 -0.1 1,716,394 - AO356_07725 0.51 -0.1 1,716,468 + AO356_07725 0.56 +1.4 1,716,468 + AO356_07725 0.56 +0.7 1,716,468 + AO356_07725 0.56 +0.5 1,716,469 - AO356_07725 0.56 -0.5 1,716,469 - AO356_07725 0.56 +1.1 1,716,545 + AO356_07725 0.61 +1.3 1,716,545 + AO356_07725 0.61 +1.0 1,716,545 + AO356_07725 0.61 -0.9 1,716,551 + AO356_07725 0.62 +0.4 1,716,551 + AO356_07725 0.62 -0.2
Or see this region's nucleotide sequence