Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01440

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01435 and AO356_01440 are separated by 98 nucleotidesAO356_01440 and AO356_01445 are separated by 76 nucleotidesAO356_01445 and AO356_01450 are separated by 294 nucleotides AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468 _01435 AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331 _01440 AO356_01445: AO356_01445 - hypothetical protein, at 330,408 to 330,995 _01445 AO356_01450: AO356_01450 - transposase, at 331,290 to 331,595 _01450 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1at 328.858 kb on + strand, within AO356_01435at 329.049 kb on + strand, within AO356_01435at 329.328 kb on + strand, within AO356_01435at 329.328 kb on + strand, within AO356_01435at 329.328 kb on + strand, within AO356_01435at 329.328 kb on + strand, within AO356_01435at 329.329 kb on - strand, within AO356_01435at 329.329 kb on - strand, within AO356_01435at 329.329 kb on - strand, within AO356_01435at 329.356 kb on - strand, within AO356_01435at 329.356 kb on - strand, within AO356_01435at 329.358 kb on + strand, within AO356_01435at 329.359 kb on - strand, within AO356_01435at 329.359 kb on - strand, within AO356_01435at 329.533 kb on - strandat 329.789 kb on + strand, within AO356_01440at 329.789 kb on + strand, within AO356_01440at 329.789 kb on + strand, within AO356_01440at 329.790 kb on - strand, within AO356_01440at 329.790 kb on - strand, within AO356_01440at 329.939 kb on + strand, within AO356_01440at 329.940 kb on - strand, within AO356_01440at 329.940 kb on - strand, within AO356_01440at 330.003 kb on + strand, within AO356_01440at 330.004 kb on - strand, within AO356_01440at 330.004 kb on - strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.423 kb on - strandat 330.572 kb on + strand, within AO356_01445at 330.573 kb on - strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.993 kb on + strandat 330.993 kb on + strandat 330.993 kb on + strandat 330.994 kb on - strandat 330.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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328,858 + AO356_01435 0.34 +0.0
329,049 + AO356_01435 0.55 -0.5
329,328 + AO356_01435 0.85 -0.1
329,328 + AO356_01435 0.85 -0.3
329,328 + AO356_01435 0.85 -0.4
329,328 + AO356_01435 0.85 -0.1
329,329 - AO356_01435 0.85 -0.8
329,329 - AO356_01435 0.85 +0.3
329,329 - AO356_01435 0.85 +1.5
329,356 - AO356_01435 0.88 -0.2
329,356 - AO356_01435 0.88 +0.1
329,358 + AO356_01435 0.88 -0.5
329,359 - AO356_01435 0.88 +0.9
329,359 - AO356_01435 0.88 +0.1
329,533 - +0.5
329,789 + AO356_01440 0.29 +0.3
329,789 + AO356_01440 0.29 -0.3
329,789 + AO356_01440 0.29 +0.2
329,790 - AO356_01440 0.29 +0.1
329,790 - AO356_01440 0.29 -0.3
329,939 + AO356_01440 0.49 -2.4
329,940 - AO356_01440 0.49 +0.4
329,940 - AO356_01440 0.49 -0.4
330,003 + AO356_01440 0.57 -0.6
330,004 - AO356_01440 0.57 -0.5
330,004 - AO356_01440 0.57 -0.8
330,188 + AO356_01440 0.81 -0.6
330,188 + AO356_01440 0.81 +0.7
330,188 + AO356_01440 0.81 +0.1
330,188 + AO356_01440 0.81 -0.1
330,188 + AO356_01440 0.81 +1.0
330,189 - AO356_01440 0.81 +0.8
330,189 - AO356_01440 0.81 +0.1
330,189 - AO356_01440 0.81 -0.5
330,189 - AO356_01440 0.81 +0.5
330,189 - AO356_01440 0.81 +0.6
330,189 - AO356_01440 0.81 -0.2
330,423 - +0.7
330,572 + AO356_01445 0.28 +1.2
330,573 - AO356_01445 0.28 -1.3
330,636 + AO356_01445 0.39 +0.1
330,636 + AO356_01445 0.39 +0.6
330,636 + AO356_01445 0.39 +0.1
330,636 + AO356_01445 0.39 -0.1
330,636 + AO356_01445 0.39 -0.3
330,636 + AO356_01445 0.39 -0.1
330,636 + AO356_01445 0.39 +0.3
330,637 - AO356_01445 0.39 -0.9
330,637 - AO356_01445 0.39 -1.0
330,637 - AO356_01445 0.39 -0.4
330,637 - AO356_01445 0.39 +0.7
330,637 - AO356_01445 0.39 -0.3
330,993 + +0.1
330,993 + +0.7
330,993 + +0.2
330,994 - +0.7
330,994 - +0.2

Or see this region's nucleotide sequence