Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01425

Experiment: Paraquat dichloride 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_01415 and AO356_01420 are separated by 2 nucleotidesAO356_01420 and AO356_01425 are separated by 113 nucleotidesAO356_01425 and AO356_01430 are separated by 13 nucleotidesAO356_01430 and AO356_01435 are separated by 142 nucleotides AO356_01415: AO356_01415 - hypothetical protein, at 325,782 to 326,234 _01415 AO356_01420: AO356_01420 - hypothetical protein, at 326,237 to 326,734 _01420 AO356_01425: AO356_01425 - LysR family transcriptional regulator, at 326,848 to 327,780 _01425 AO356_01430: AO356_01430 - NADP oxidoreductase, at 327,794 to 328,396 _01430 AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468 _01435 Position (kb) 326 327 328Strain fitness (log2 ratio) -1 0 1at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 326.436 kb on + strand, within AO356_01420at 326.436 kb on + strand, within AO356_01420at 326.436 kb on + strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.658 kb on - strand, within AO356_01420at 326.658 kb on - strand, within AO356_01420at 326.661 kb on - strand, within AO356_01420at 327.203 kb on + strand, within AO356_01425at 327.203 kb on + strand, within AO356_01425at 327.204 kb on - strand, within AO356_01425at 327.253 kb on + strand, within AO356_01425at 327.254 kb on - strand, within AO356_01425at 327.374 kb on - strand, within AO356_01425at 327.436 kb on + strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.499 kb on + strand, within AO356_01425at 327.644 kb on - strand, within AO356_01425at 327.881 kb on + strand, within AO356_01430at 327.882 kb on - strand, within AO356_01430at 328.316 kb on + strand, within AO356_01430at 328.316 kb on + strand, within AO356_01430at 328.316 kb on + strand, within AO356_01430at 328.317 kb on - strand, within AO356_01430at 328.317 kb on - strand, within AO356_01430at 328.317 kb on - strand, within AO356_01430at 328.428 kb on + strandat 328.521 kb on + strandat 328.521 kb on + strandat 328.521 kb on + strandat 328.522 kb on - strandat 328.525 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
remove
325,996 + AO356_01415 0.47 +0.3
325,996 + AO356_01415 0.47 -0.6
325,996 + AO356_01415 0.47 -0.7
325,996 + AO356_01415 0.47 -0.3
325,996 + AO356_01415 0.47 +1.2
325,996 + AO356_01415 0.47 +1.2
325,997 - AO356_01415 0.47 +0.5
325,997 - AO356_01415 0.47 +0.3
325,997 - AO356_01415 0.47 +1.0
325,997 - AO356_01415 0.47 -0.3
325,997 - AO356_01415 0.47 -0.2
325,997 - AO356_01415 0.47 +1.0
325,997 - AO356_01415 0.47 -0.3
325,997 - AO356_01415 0.47 -0.1
326,436 + AO356_01420 0.40 +1.2
326,436 + AO356_01420 0.40 +0.4
326,436 + AO356_01420 0.40 +0.7
326,437 - AO356_01420 0.40 +0.1
326,437 - AO356_01420 0.40 +0.3
326,437 - AO356_01420 0.40 +0.3
326,437 - AO356_01420 0.40 -0.1
326,437 - AO356_01420 0.40 +0.5
326,658 - AO356_01420 0.85 +0.6
326,658 - AO356_01420 0.85 -0.6
326,661 - AO356_01420 0.85 +0.1
327,203 + AO356_01425 0.38 -1.5
327,203 + AO356_01425 0.38 +0.5
327,204 - AO356_01425 0.38 +0.4
327,253 + AO356_01425 0.43 -0.0
327,254 - AO356_01425 0.44 -0.1
327,374 - AO356_01425 0.56 +0.2
327,436 + AO356_01425 0.63 -1.1
327,437 - AO356_01425 0.63 +0.2
327,437 - AO356_01425 0.63 +0.4
327,437 - AO356_01425 0.63 -1.4
327,437 - AO356_01425 0.63 -0.3
327,499 + AO356_01425 0.70 +0.5
327,644 - AO356_01425 0.85 -0.8
327,881 + AO356_01430 0.14 +0.0
327,882 - AO356_01430 0.15 +1.4
328,316 + AO356_01430 0.87 +1.0
328,316 + AO356_01430 0.87 +1.5
328,316 + AO356_01430 0.87 -1.2
328,317 - AO356_01430 0.87 +0.4
328,317 - AO356_01430 0.87 +0.4
328,317 - AO356_01430 0.87 +0.9
328,428 + +1.6
328,521 + -0.7
328,521 + +0.3
328,521 + -0.6
328,522 - +0.8
328,525 - -0.1

Or see this region's nucleotide sequence