Strain Fitness in Sinorhizobium meliloti 1021 around SMc02693

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02692 and SMc02693 are separated by 361 nucleotidesSMc02693 and SMc02694 are separated by 55 nucleotidesSMc02694 and SMc02695 are separated by 230 nucleotides SMc02692: SMc02692 - 50S ribosomal protein L25, at 2,542,289 to 2,542,903 SMc02692 SMc02693: SMc02693 - peptidyl-tRNA hydrolase, at 2,543,265 to 2,543,984 SMc02693 SMc02694: SMc02694 - ATP-dependent Clp protease adaptor, at 2,544,040 to 2,544,345 SMc02694 SMc02695: SMc02695 - GTP-dependent nucleic acid-binding protein EngD, at 2,544,576 to 2,545,679 SMc02695 Position (kb) 2543 2544Strain fitness (log2 ratio) -2 -1 0 1at 2543.886 kb on - strand, within SMc02693at 2543.888 kb on - strand, within SMc02693at 2543.939 kb on + strandat 2543.982 kb on + strandat 2544.281 kb on + strand, within SMc02694at 2544.282 kb on - strand, within SMc02694at 2544.328 kb on + strandat 2544.349 kb on + strandat 2544.349 kb on + strandat 2544.538 kb on - strandat 2544.538 kb on - strandat 2544.673 kb on - strandat 2544.791 kb on - strand, within SMc02695

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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2,543,886 - SMc02693 0.86 +1.2
2,543,888 - SMc02693 0.87 +0.9
2,543,939 + +0.3
2,543,982 + +0.5
2,544,281 + SMc02694 0.79 -0.3
2,544,282 - SMc02694 0.79 -0.6
2,544,328 + -0.4
2,544,349 + -0.0
2,544,349 + +0.8
2,544,538 - -0.1
2,544,538 - +0.4
2,544,673 - -0.6
2,544,791 - SMc02695 0.19 -2.1

Or see this region's nucleotide sequence