Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01633 and SMc01634 overlap by 1 nucleotides SMc01634 and SMc01635 are separated by 4 nucleotides SMc01635 and SMc01636 are separated by 91 nucleotides
SMc01633: SMc01633 - ABC transporter permease, at 2,425,834 to 2,426,700
SMc01633
SMc01634: SMc01634 - ABC transporter permease, at 2,426,700 to 2,427,518
SMc01634
SMc01635: SMc01635 - oxidoreductase, at 2,427,523 to 2,428,284
SMc01635
SMc01636: SMc01636 - transcriptional regulator, at 2,428,376 to 2,429,347
SMc01636
Position (kb)
2427
2428
2429 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2426.736 kb on + strand at 2427.232 kb on - strand, within SMc01634 at 2427.232 kb on - strand, within SMc01634 at 2427.232 kb on - strand, within SMc01634 at 2427.232 kb on - strand, within SMc01634 at 2427.232 kb on - strand, within SMc01634 at 2427.381 kb on + strand, within SMc01634 at 2427.382 kb on - strand, within SMc01634 at 2427.460 kb on + strand at 2427.460 kb on + strand at 2427.461 kb on - strand at 2427.464 kb on + strand at 2427.464 kb on + strand at 2427.464 kb on + strand at 2427.961 kb on + strand, within SMc01635 at 2427.962 kb on - strand, within SMc01635 at 2427.982 kb on + strand, within SMc01635 at 2428.037 kb on - strand, within SMc01635 at 2428.045 kb on + strand, within SMc01635 at 2428.144 kb on + strand, within SMc01635 at 2428.144 kb on + strand, within SMc01635 at 2428.144 kb on + strand, within SMc01635 at 2428.145 kb on - strand at 2428.145 kb on - strand, within SMc01635 at 2428.234 kb on + strand at 2428.234 kb on + strand at 2428.234 kb on + strand at 2428.235 kb on - strand at 2428.235 kb on - strand at 2428.484 kb on + strand, within SMc01636 at 2428.552 kb on - strand, within SMc01636 at 2428.552 kb on - strand, within SMc01636 at 2428.767 kb on + strand, within SMc01636 at 2428.768 kb on - strand, within SMc01636 at 2428.768 kb on - strand, within SMc01636 at 2428.768 kb on - strand, within SMc01636 at 2428.921 kb on - strand, within SMc01636 at 2429.220 kb on + strand, within SMc01636 at 2429.220 kb on + strand, within SMc01636 at 2429.221 kb on - strand, within SMc01636
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 2,426,736 + +2.3 2,427,232 - SMc01634 0.65 -0.0 2,427,232 - SMc01634 0.65 -1.3 2,427,232 - SMc01634 0.65 -0.4 2,427,232 - SMc01634 0.65 -0.2 2,427,232 - SMc01634 0.65 +0.0 2,427,381 + SMc01634 0.83 +0.1 2,427,382 - SMc01634 0.83 -1.0 2,427,460 + -0.6 2,427,460 + -0.1 2,427,461 - -0.0 2,427,464 + +0.1 2,427,464 + -2.9 2,427,464 + -0.2 2,427,961 + SMc01635 0.57 +0.1 2,427,962 - SMc01635 0.58 +1.3 2,427,982 + SMc01635 0.60 -0.9 2,428,037 - SMc01635 0.67 +0.1 2,428,045 + SMc01635 0.69 -1.0 2,428,144 + SMc01635 0.81 -0.4 2,428,144 + SMc01635 0.81 -1.5 2,428,144 + SMc01635 0.81 +0.1 2,428,145 - +1.3 2,428,145 - SMc01635 0.82 -2.2 2,428,234 + -0.2 2,428,234 + +0.3 2,428,234 + -0.2 2,428,235 - +0.2 2,428,235 - -0.1 2,428,484 + SMc01636 0.11 +0.6 2,428,552 - SMc01636 0.18 -0.5 2,428,552 - SMc01636 0.18 -0.3 2,428,767 + SMc01636 0.40 +0.2 2,428,768 - SMc01636 0.40 -2.4 2,428,768 - SMc01636 0.40 +0.5 2,428,768 - SMc01636 0.40 +0.1 2,428,921 - SMc01636 0.56 -0.0 2,429,220 + SMc01636 0.87 +0.7 2,429,220 + SMc01636 0.87 +1.0 2,429,221 - SMc01636 0.87 +0.3
Or see this region's nucleotide sequence