Strain Fitness in Sinorhizobium meliloti 1021 around SMc01631

Experiment: sodium fluoride 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01630 and SMc01631 are separated by 184 nucleotidesSMc01631 and SMc01632 are separated by 51 nucleotides SMc01630: SMc01630 - transcriptional regulator, at 2,422,399 to 2,423,202 SMc01630 SMc01631: SMc01631 - ABC transporter ATP-binding protein, at 2,423,387 to 2,424,466 SMc01631 SMc01632: SMc01632 - periplasmic binding ABC transporter protein, at 2,424,518 to 2,425,681 SMc01632 Position (kb) 2423 2424 2425Strain fitness (log2 ratio) -2 -1 0 1 2at 2422.401 kb on - strandat 2422.401 kb on - strandat 2422.421 kb on + strandat 2422.421 kb on + strandat 2422.421 kb on + strandat 2422.467 kb on - strandat 2422.859 kb on + strand, within SMc01630at 2422.859 kb on + strand, within SMc01630at 2422.860 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.872 kb on - strand, within SMc01630at 2422.875 kb on - strand, within SMc01630at 2422.875 kb on - strand, within SMc01630at 2422.952 kb on + strand, within SMc01630at 2422.970 kb on + strand, within SMc01630at 2422.970 kb on + strand, within SMc01630at 2422.971 kb on - strand, within SMc01630at 2422.971 kb on - strand, within SMc01630at 2422.986 kb on - strand, within SMc01630at 2423.026 kb on - strand, within SMc01630at 2423.031 kb on - strand, within SMc01630at 2423.031 kb on - strand, within SMc01630at 2423.079 kb on - strand, within SMc01630at 2423.286 kb on - strandat 2423.438 kb on + strandat 2423.438 kb on + strandat 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.651 kb on + strand, within SMc01631at 2423.652 kb on - strand, within SMc01631at 2423.694 kb on - strand, within SMc01631at 2423.719 kb on + strand, within SMc01631at 2424.004 kb on + strand, within SMc01631at 2424.071 kb on + strand, within SMc01631at 2424.072 kb on - strand, within SMc01631at 2424.072 kb on - strand, within SMc01631at 2424.072 kb on - strand, within SMc01631at 2424.503 kb on + strandat 2424.530 kb on + strandat 2424.531 kb on - strandat 2424.690 kb on - strand, within SMc01632at 2424.740 kb on + strand, within SMc01632at 2424.740 kb on + strand, within SMc01632at 2424.740 kb on + strand, within SMc01632at 2424.741 kb on - strand, within SMc01632at 2424.896 kb on + strand, within SMc01632at 2424.896 kb on + strand, within SMc01632at 2424.896 kb on + strand, within SMc01632at 2424.897 kb on - strand, within SMc01632at 2424.897 kb on - strand, within SMc01632at 2424.947 kb on + strand, within SMc01632at 2424.947 kb on + strand, within SMc01632at 2424.948 kb on - strand, within SMc01632at 2424.948 kb on - strand, within SMc01632at 2425.007 kb on + strand, within SMc01632at 2425.007 kb on + strand, within SMc01632at 2425.007 kb on + strand, within SMc01632at 2425.007 kb on + strand, within SMc01632at 2425.008 kb on - strand, within SMc01632at 2425.008 kb on - strand, within SMc01632at 2425.008 kb on - strand, within SMc01632at 2425.008 kb on - strand, within SMc01632at 2425.143 kb on - strand, within SMc01632at 2425.259 kb on + strand, within SMc01632at 2425.259 kb on + strand, within SMc01632at 2425.260 kb on - strand, within SMc01632at 2425.260 kb on - strand, within SMc01632at 2425.413 kb on - strand, within SMc01632

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
remove
2,422,401 - -0.5
2,422,401 - -0.9
2,422,421 + -0.0
2,422,421 + +0.2
2,422,421 + +0.5
2,422,467 - -0.2
2,422,859 + SMc01630 0.57 -0.6
2,422,859 + SMc01630 0.57 +0.6
2,422,860 - SMc01630 0.57 +1.2
2,422,863 - SMc01630 0.58 -1.9
2,422,863 - SMc01630 0.58 -0.6
2,422,863 - SMc01630 0.58 +0.6
2,422,863 - SMc01630 0.58 -1.2
2,422,863 - SMc01630 0.58 +0.2
2,422,863 - SMc01630 0.58 -0.4
2,422,872 - SMc01630 0.59 -1.1
2,422,875 - SMc01630 0.59 +0.1
2,422,875 - SMc01630 0.59 -0.4
2,422,952 + SMc01630 0.69 -2.7
2,422,970 + SMc01630 0.71 +0.5
2,422,970 + SMc01630 0.71 +0.4
2,422,971 - SMc01630 0.71 +0.7
2,422,971 - SMc01630 0.71 +0.0
2,422,986 - SMc01630 0.73 -0.6
2,423,026 - SMc01630 0.78 -0.3
2,423,031 - SMc01630 0.79 -0.3
2,423,031 - SMc01630 0.79 +0.8
2,423,079 - SMc01630 0.85 -0.1
2,423,286 - -0.3
2,423,438 + +0.1
2,423,438 + -0.9
2,423,582 + SMc01631 0.18 +0.1
2,423,582 + SMc01631 0.18 +0.3
2,423,582 + SMc01631 0.18 -0.6
2,423,582 + SMc01631 0.18 +2.1
2,423,582 + SMc01631 0.18 -0.8
2,423,582 + SMc01631 0.18 +1.5
2,423,582 + SMc01631 0.18 +1.7
2,423,582 + SMc01631 0.18 +0.9
2,423,582 + SMc01631 0.18 -0.3
2,423,583 - SMc01631 0.18 +0.7
2,423,583 - SMc01631 0.18 -0.3
2,423,583 - SMc01631 0.18 -0.0
2,423,583 - SMc01631 0.18 -0.1
2,423,583 - SMc01631 0.18 -0.0
2,423,651 + SMc01631 0.24 +0.0
2,423,652 - SMc01631 0.25 +0.7
2,423,694 - SMc01631 0.28 +0.1
2,423,719 + SMc01631 0.31 -0.3
2,424,004 + SMc01631 0.57 +0.0
2,424,071 + SMc01631 0.63 +0.1
2,424,072 - SMc01631 0.63 -0.6
2,424,072 - SMc01631 0.63 -0.8
2,424,072 - SMc01631 0.63 +0.5
2,424,503 + -1.2
2,424,530 + -0.0
2,424,531 - +0.4
2,424,690 - SMc01632 0.15 -0.2
2,424,740 + SMc01632 0.19 -0.1
2,424,740 + SMc01632 0.19 -0.2
2,424,740 + SMc01632 0.19 -0.5
2,424,741 - SMc01632 0.19 +0.4
2,424,896 + SMc01632 0.32 -2.3
2,424,896 + SMc01632 0.32 -0.1
2,424,896 + SMc01632 0.32 -0.0
2,424,897 - SMc01632 0.33 +0.4
2,424,897 - SMc01632 0.33 +0.0
2,424,947 + SMc01632 0.37 +0.1
2,424,947 + SMc01632 0.37 +0.0
2,424,948 - SMc01632 0.37 -0.4
2,424,948 - SMc01632 0.37 +1.2
2,425,007 + SMc01632 0.42 +0.7
2,425,007 + SMc01632 0.42 +0.2
2,425,007 + SMc01632 0.42 +0.4
2,425,007 + SMc01632 0.42 -0.8
2,425,008 - SMc01632 0.42 -0.4
2,425,008 - SMc01632 0.42 +0.1
2,425,008 - SMc01632 0.42 -1.3
2,425,008 - SMc01632 0.42 +0.5
2,425,143 - SMc01632 0.54 -0.1
2,425,259 + SMc01632 0.64 -0.3
2,425,259 + SMc01632 0.64 +1.6
2,425,260 - SMc01632 0.64 +0.1
2,425,260 - SMc01632 0.64 -0.3
2,425,413 - SMc01632 0.77 -1.0

Or see this region's nucleotide sequence