Strain Fitness in Sinorhizobium meliloti 1021 around SMc01270

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01272 and SMc01271 are separated by 22 nucleotidesSMc01271 and SMc01270 are separated by 73 nucleotidesSMc01270 and SMc01269 are separated by 88 nucleotidesSMc01269 and SMc01268 are separated by 182 nucleotides SMc01272: SMc01272 - hypothetical protein, at 1,502,836 to 1,503,495 SMc01272 SMc01271: SMc01271 - hypothetical protein, at 1,503,518 to 1,503,958 SMc01271 SMc01270: SMc01270 - alcohol dehydrogenase, at 1,504,032 to 1,505,159 SMc01270 SMc01269: SMc01269 - transcriptional regulator, at 1,505,248 to 1,505,646 SMc01269 SMc01268: SMc01268 - lipoate-protein ligase B, at 1,505,829 to 1,506,587 SMc01268 Position (kb) 1504 1505 1506Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1503.101 kb on + strand, within SMc01272at 1503.113 kb on + strand, within SMc01272at 1503.113 kb on + strand, within SMc01272at 1503.113 kb on + strand, within SMc01272at 1503.113 kb on + strand, within SMc01272at 1503.113 kb on + strand, within SMc01272at 1503.114 kb on - strand, within SMc01272at 1503.359 kb on + strand, within SMc01272at 1503.359 kb on + strand, within SMc01272at 1503.359 kb on + strand, within SMc01272at 1503.359 kb on + strand, within SMc01272at 1503.359 kb on + strand, within SMc01272at 1503.360 kb on - strand, within SMc01272at 1503.360 kb on - strand, within SMc01272at 1503.364 kb on - strand, within SMc01272at 1503.364 kb on - strand, within SMc01272at 1503.459 kb on - strandat 1503.459 kb on - strandat 1503.520 kb on - strandat 1503.952 kb on - strandat 1504.037 kb on - strandat 1504.037 kb on - strandat 1505.152 kb on - strandat 1505.152 kb on - strandat 1505.165 kb on + strandat 1505.177 kb on + strandat 1505.178 kb on - strandat 1505.178 kb on - strandat 1505.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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1,503,101 + SMc01272 0.40 -3.5
1,503,113 + SMc01272 0.42 -2.1
1,503,113 + SMc01272 0.42 +0.0
1,503,113 + SMc01272 0.42 -3.4
1,503,113 + SMc01272 0.42 -5.0
1,503,113 + SMc01272 0.42 -2.4
1,503,114 - SMc01272 0.42 -1.7
1,503,359 + SMc01272 0.79 -6.0
1,503,359 + SMc01272 0.79 -3.5
1,503,359 + SMc01272 0.79 -4.1
1,503,359 + SMc01272 0.79 -4.3
1,503,359 + SMc01272 0.79 -2.0
1,503,360 - SMc01272 0.79 -0.1
1,503,360 - SMc01272 0.79 +0.1
1,503,364 - SMc01272 0.80 +0.4
1,503,364 - SMc01272 0.80 -0.6
1,503,459 - -0.2
1,503,459 - +1.2
1,503,520 - +0.8
1,503,952 - -1.1
1,504,037 - -0.2
1,504,037 - +0.7
1,505,152 - -2.1
1,505,152 - -1.4
1,505,165 + -2.0
1,505,177 + -1.7
1,505,178 - +1.2
1,505,178 - -2.1
1,505,728 - +0.7

Or see this region's nucleotide sequence