Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00588 and SMc00589 are separated by 114 nucleotides SMc00589 and SMc00590 are separated by 19 nucleotides
SMc00588: SMc00588 - L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) , at 1,259,399 to 1,260,325
SMc00588
SMc00589: SMc00589 - hypothetical protein, at 1,260,440 to 1,261,354
SMc00589
SMc00590: SMc00590 - ABC transporter ATP-binding protein, at 1,261,374 to 1,263,263
SMc00590
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1259.521 kb on - strand, within SMc00588 at 1259.533 kb on - strand, within SMc00588 at 1259.965 kb on - strand, within SMc00588 at 1260.370 kb on - strand at 1260.370 kb on - strand at 1260.370 kb on - strand at 1260.385 kb on - strand at 1260.454 kb on + strand at 1260.454 kb on + strand at 1260.454 kb on + strand at 1260.454 kb on + strand at 1260.523 kb on + strand at 1260.523 kb on + strand at 1260.596 kb on - strand, within SMc00589 at 1260.741 kb on - strand, within SMc00589 at 1260.968 kb on + strand, within SMc00589 at 1260.969 kb on - strand, within SMc00589 at 1261.109 kb on + strand, within SMc00589 at 1261.199 kb on + strand, within SMc00589 at 1261.200 kb on - strand, within SMc00589 at 1261.250 kb on + strand, within SMc00589 at 1261.286 kb on + strand at 1261.287 kb on - strand at 1261.287 kb on - strand at 1261.396 kb on + strand at 1262.288 kb on + strand, within SMc00590 at 1262.289 kb on - strand, within SMc00590
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 1,259,521 - SMc00588 0.13 -0.8 1,259,533 - SMc00588 0.14 +1.8 1,259,965 - SMc00588 0.61 +0.0 1,260,370 - -0.1 1,260,370 - +1.2 1,260,370 - -0.9 1,260,385 - +0.2 1,260,454 + -0.0 1,260,454 + -0.2 1,260,454 + -0.3 1,260,454 + +0.0 1,260,523 + -2.1 1,260,523 + -0.0 1,260,596 - SMc00589 0.17 -0.7 1,260,741 - SMc00589 0.33 -2.2 1,260,968 + SMc00589 0.58 -0.4 1,260,969 - SMc00589 0.58 -0.5 1,261,109 + SMc00589 0.73 +0.3 1,261,199 + SMc00589 0.83 +0.0 1,261,200 - SMc00589 0.83 -1.8 1,261,250 + SMc00589 0.89 -0.2 1,261,286 + -0.7 1,261,287 - +0.1 1,261,287 - -0.4 1,261,396 + +0.3 1,262,288 + SMc00590 0.48 -0.2 1,262,289 - SMc00590 0.48 -0.2
Or see this region's nucleotide sequence