Strain Fitness in Sinorhizobium meliloti 1021 around SMc00303

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00248 and SMc00303 are separated by 557 nucleotidesSMc00303 and SMc00249 are separated by 152 nucleotides SMc00248: SMc00248 - cytochrome C-type biogenesis protein, at 1,818,217 to 1,818,960 SMc00248 SMc00303: SMc00303 - tRNA-Lys, at 1,819,518 to 1,819,593 SMc00303 SMc00249: SMc00249 - hypothetical protein, at 1,819,746 to 1,820,051 SMc00249 Position (kb) 1819 1820Strain fitness (log2 ratio) -2 -1 0 1at 1819.007 kb on + strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.121 kb on + strandat 1819.422 kb on + strandat 1819.425 kb on - strandat 1819.615 kb on - strandat 1819.667 kb on + strandat 1819.667 kb on + strandat 1819.667 kb on + strandat 1819.668 kb on - strandat 1819.668 kb on - strandat 1819.668 kb on - strandat 1819.672 kb on + strandat 1819.673 kb on - strandat 1819.782 kb on + strand, within SMc00249at 1819.782 kb on + strand, within SMc00249at 1819.783 kb on - strand, within SMc00249at 1819.812 kb on + strand, within SMc00249at 1819.812 kb on + strand, within SMc00249at 1819.883 kb on + strand, within SMc00249at 1819.883 kb on + strand, within SMc00249at 1819.883 kb on + strand, within SMc00249at 1819.884 kb on - strand, within SMc00249at 1819.884 kb on - strand, within SMc00249at 1819.884 kb on - strand, within SMc00249at 1819.884 kb on - strand, within SMc00249at 1819.941 kb on + strand, within SMc00249at 1819.942 kb on - strand, within SMc00249at 1819.942 kb on - strand, within SMc00249at 1820.049 kb on + strandat 1820.050 kb on - strandat 1820.080 kb on + strandat 1820.091 kb on + strandat 1820.091 kb on + strandat 1820.091 kb on + strandat 1820.091 kb on + strandat 1820.091 kb on + strandat 1820.092 kb on - strandat 1820.092 kb on - strandat 1820.092 kb on - strandat 1820.179 kb on + strandat 1820.179 kb on + strandat 1820.179 kb on + strandat 1820.257 kb on + strandat 1820.257 kb on + strandat 1820.257 kb on + strandat 1820.258 kb on - strandat 1820.258 kb on - strandat 1820.258 kb on - strandat 1820.274 kb on + strandat 1820.274 kb on + strandat 1820.274 kb on + strandat 1820.275 kb on - strandat 1820.275 kb on - strandat 1820.275 kb on - strandat 1820.410 kb on - strandat 1820.410 kb on - strandat 1820.487 kb on - strandat 1820.496 kb on + strandat 1820.502 kb on + strandat 1820.502 kb on + strandat 1820.503 kb on - strandat 1820.503 kb on - strandat 1820.503 kb on - strandat 1820.503 kb on - strandat 1820.503 kb on - strandat 1820.503 kb on - strandat 1820.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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1,819,007 + -1.6
1,819,008 - +0.2
1,819,008 - -1.2
1,819,008 - +0.3
1,819,008 - -0.3
1,819,008 - -0.4
1,819,121 + -0.1
1,819,422 + +0.1
1,819,425 - -0.3
1,819,615 - +0.0
1,819,667 + -0.5
1,819,667 + -0.0
1,819,667 + -0.1
1,819,668 - +0.6
1,819,668 - +1.2
1,819,668 - +0.1
1,819,672 + -0.0
1,819,673 - -0.2
1,819,782 + SMc00249 0.12 +0.0
1,819,782 + SMc00249 0.12 -1.2
1,819,783 - SMc00249 0.12 -0.9
1,819,812 + SMc00249 0.22 +0.4
1,819,812 + SMc00249 0.22 -0.2
1,819,883 + SMc00249 0.45 -1.5
1,819,883 + SMc00249 0.45 -0.4
1,819,883 + SMc00249 0.45 +0.1
1,819,884 - SMc00249 0.45 -0.6
1,819,884 - SMc00249 0.45 +0.2
1,819,884 - SMc00249 0.45 -0.0
1,819,884 - SMc00249 0.45 +0.3
1,819,941 + SMc00249 0.64 -0.3
1,819,942 - SMc00249 0.64 -1.2
1,819,942 - SMc00249 0.64 -1.9
1,820,049 + -1.4
1,820,050 - +0.5
1,820,080 + +0.1
1,820,091 + -0.2
1,820,091 + +0.3
1,820,091 + +0.6
1,820,091 + +0.3
1,820,091 + +0.4
1,820,092 - +0.3
1,820,092 - +0.4
1,820,092 - -0.5
1,820,179 + -0.4
1,820,179 + -0.7
1,820,179 + +0.2
1,820,257 + -0.1
1,820,257 + +0.2
1,820,257 + -0.1
1,820,258 - +0.4
1,820,258 - -0.1
1,820,258 - -0.1
1,820,274 + -0.8
1,820,274 + +0.3
1,820,274 + +0.0
1,820,275 - -0.3
1,820,275 - +0.1
1,820,275 - -0.0
1,820,410 - +0.5
1,820,410 - +0.1
1,820,487 - +0.5
1,820,496 + -0.1
1,820,502 + -0.1
1,820,502 + -0.3
1,820,503 - +0.3
1,820,503 - +0.2
1,820,503 - -0.2
1,820,503 - +0.1
1,820,503 - +0.4
1,820,503 - +0.3
1,820,503 - -0.0

Or see this region's nucleotide sequence