Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1893 and SMa1894 are separated by 109 nucleotides SMa1894 and SMa1896 are separated by 0 nucleotides SMa1896 and SMa1898 are separated by 205 nucleotides
SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770
SMa1893
SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323
SMa1894
SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830
SMa1896
SMa1898: SMa1898 - hypothetical protein, at 1,078,036 to 1,079,262
SMa1898
Position (kb)
1076
1077
1078 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1075.916 kb on + strand at 1076.040 kb on - strand, within SMa1893 at 1076.168 kb on - strand, within SMa1893 at 1076.275 kb on - strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.326 kb on + strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.463 kb on - strand, within SMa1893 at 1076.469 kb on - strand, within SMa1893 at 1076.659 kb on - strand, within SMa1893 at 1076.802 kb on + strand at 1076.802 kb on + strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.887 kb on - strand at 1076.918 kb on + strand at 1076.919 kb on - strand at 1076.980 kb on - strand, within SMa1894 at 1077.006 kb on + strand, within SMa1894 at 1077.006 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.288 kb on + strand at 1077.417 kb on + strand, within SMa1896 at 1077.447 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.607 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.772 kb on - strand, within SMa1896 at 1077.805 kb on + strand at 1077.853 kb on + strand at 1077.854 kb on - strand at 1077.943 kb on + strand at 1077.943 kb on + strand at 1078.003 kb on + strand at 1078.008 kb on + strand at 1078.009 kb on - strand at 1078.047 kb on + strand at 1078.319 kb on - strand, within SMa1898
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 1,075,916 + +0.1 1,076,040 - SMa1893 0.17 +1.0 1,076,168 - SMa1893 0.31 -2.8 1,076,275 - SMa1893 0.43 +0.3 1,076,315 + SMa1893 0.48 -2.0 1,076,315 + SMa1893 0.48 +0.3 1,076,316 - SMa1893 0.48 +0.4 1,076,316 - SMa1893 0.48 +0.4 1,076,326 + SMa1893 0.49 -0.9 1,076,327 - SMa1893 0.49 +0.1 1,076,327 - SMa1893 0.49 +0.8 1,076,327 - SMa1893 0.49 +0.5 1,076,463 - SMa1893 0.65 +0.1 1,076,469 - SMa1893 0.66 -1.6 1,076,659 - SMa1893 0.87 +0.2 1,076,802 + +0.7 1,076,802 + +0.2 1,076,803 - +0.7 1,076,803 - +0.6 1,076,803 - +0.2 1,076,803 - -0.5 1,076,887 - +0.7 1,076,918 + -0.2 1,076,919 - -0.1 1,076,980 - SMa1894 0.23 +1.6 1,077,006 + SMa1894 0.28 +0.9 1,077,006 + SMa1894 0.28 -1.3 1,077,228 + SMa1894 0.78 +0.1 1,077,228 + SMa1894 0.78 +0.1 1,077,288 + -0.5 1,077,417 + SMa1896 0.18 +0.0 1,077,447 + SMa1896 0.24 -0.7 1,077,591 + SMa1896 0.53 +0.1 1,077,591 + SMa1896 0.53 -1.1 1,077,606 + SMa1896 0.56 -0.4 1,077,606 + SMa1896 0.56 -0.4 1,077,606 + SMa1896 0.56 -0.3 1,077,606 + SMa1896 0.56 -0.7 1,077,607 - SMa1896 0.56 +0.0 1,077,748 - SMa1896 0.84 +2.0 1,077,748 - SMa1896 0.84 -0.1 1,077,772 - SMa1896 0.88 +0.4 1,077,805 + -0.4 1,077,853 + +0.4 1,077,854 - -0.1 1,077,943 + +0.0 1,077,943 + -0.6 1,078,003 + -0.1 1,078,008 + -0.2 1,078,009 - -0.1 1,078,047 + +0.8 1,078,319 - SMa1898 0.23 +0.1
Or see this region's nucleotide sequence