Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0762 and SMa0763 are separated by 11 nucleotides SMa0763 and SMa0765 are separated by 102 nucleotides SMa0765 and SMa0766 are separated by 11 nucleotides SMa0766 and SMa0767 are separated by 11 nucleotides SMa0767 and SMa0769 are separated by 3 nucleotides
SMa0762: SMa0762 - transcriptional regulator FixK, at 412,790 to 413,425
SMa0762
SMa0763: SMa0763 - hypothetical protein, at 413,437 to 414,084
SMa0763
SMa0765: SMa0765 - cbb3-type cytochrome c oxidase subunit I, at 414,187 to 415,806
SMa0765
SMa0766: SMa0766 - cbb3-type cytochrome c oxidase subunit II, at 415,818 to 416,549
SMa0766
SMa0767: SMa0767 - FixQ2 nitrogen fixation protein, at 416,561 to 416,713
SMa0767
SMa0769: SMa0769 - FixP2 Diheme c-type cytochrome, at 416,717 to 417,580
SMa0769
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 413.544 kb on + strand, within SMa0763 at 413.597 kb on + strand, within SMa0763 at 413.598 kb on - strand, within SMa0763 at 413.615 kb on + strand, within SMa0763 at 413.640 kb on - strand, within SMa0763 at 413.650 kb on + strand, within SMa0763 at 413.651 kb on - strand, within SMa0763 at 413.864 kb on + strand, within SMa0763 at 413.948 kb on + strand, within SMa0763 at 413.949 kb on - strand, within SMa0763 at 414.004 kb on - strand at 414.213 kb on - strand at 414.213 kb on - strand at 414.213 kb on - strand at 414.290 kb on + strand at 414.386 kb on - strand, within SMa0765 at 414.593 kb on - strand, within SMa0765 at 414.593 kb on - strand, within SMa0765 at 414.694 kb on + strand, within SMa0765 at 414.709 kb on - strand, within SMa0765 at 414.768 kb on - strand, within SMa0765 at 414.768 kb on - strand, within SMa0765 at 414.778 kb on + strand, within SMa0765 at 414.829 kb on + strand, within SMa0765 at 414.829 kb on + strand, within SMa0765 at 414.829 kb on + strand, within SMa0765 at 414.830 kb on - strand, within SMa0765 at 414.848 kb on - strand, within SMa0765 at 414.976 kb on + strand, within SMa0765 at 414.976 kb on + strand, within SMa0765 at 415.030 kb on + strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.034 kb on - strand, within SMa0765 at 415.052 kb on + strand, within SMa0765 at 415.066 kb on + strand, within SMa0765 at 415.067 kb on - strand, within SMa0765 at 415.115 kb on - strand, within SMa0765 at 415.145 kb on - strand, within SMa0765 at 415.145 kb on - strand, within SMa0765 at 415.312 kb on + strand, within SMa0765 at 415.312 kb on + strand, within SMa0765 at 415.450 kb on + strand, within SMa0765 at 415.489 kb on + strand, within SMa0765 at 415.490 kb on - strand, within SMa0765 at 415.533 kb on - strand, within SMa0765 at 415.804 kb on + strand at 415.817 kb on + strand at 415.929 kb on + strand, within SMa0766 at 415.971 kb on + strand, within SMa0766 at 415.971 kb on + strand, within SMa0766 at 415.971 kb on + strand, within SMa0766 at 416.005 kb on - strand, within SMa0766 at 416.022 kb on + strand, within SMa0766 at 416.023 kb on - strand, within SMa0766 at 416.023 kb on - strand, within SMa0766 at 416.074 kb on - strand, within SMa0766 at 416.082 kb on + strand, within SMa0766 at 416.082 kb on + strand, within SMa0766 at 416.106 kb on + strand, within SMa0766 at 416.106 kb on + strand, within SMa0766 at 416.107 kb on - strand, within SMa0766 at 416.107 kb on - strand, within SMa0766 at 416.172 kb on + strand, within SMa0766 at 416.173 kb on - strand, within SMa0766 at 416.245 kb on - strand, within SMa0766 at 416.245 kb on - strand, within SMa0766 at 416.261 kb on + strand, within SMa0766 at 416.262 kb on - strand, within SMa0766 at 416.262 kb on - strand, within SMa0766 at 416.325 kb on + strand, within SMa0766 at 416.362 kb on + strand, within SMa0766 at 416.362 kb on + strand, within SMa0766 at 416.363 kb on - strand, within SMa0766 at 416.524 kb on - strand at 416.573 kb on - strand at 416.573 kb on - strand at 416.742 kb on + strand at 416.751 kb on + strand at 416.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 413,544 + SMa0763 0.17 +0.7 413,597 + SMa0763 0.25 +0.0 413,598 - SMa0763 0.25 -0.1 413,615 + SMa0763 0.27 +1.0 413,640 - SMa0763 0.31 +0.1 413,650 + SMa0763 0.33 -0.8 413,651 - SMa0763 0.33 +0.3 413,864 + SMa0763 0.66 +0.4 413,948 + SMa0763 0.79 -0.6 413,949 - SMa0763 0.79 +0.3 414,004 - -1.3 414,213 - -0.2 414,213 - +0.4 414,213 - -0.7 414,290 + +2.2 414,386 - SMa0765 0.12 +0.2 414,593 - SMa0765 0.25 +0.6 414,593 - SMa0765 0.25 -0.0 414,694 + SMa0765 0.31 -0.6 414,709 - SMa0765 0.32 +0.1 414,768 - SMa0765 0.36 +0.1 414,768 - SMa0765 0.36 +0.4 414,778 + SMa0765 0.36 -0.6 414,829 + SMa0765 0.40 +0.3 414,829 + SMa0765 0.40 +1.0 414,829 + SMa0765 0.40 +0.7 414,830 - SMa0765 0.40 +0.9 414,848 - SMa0765 0.41 +0.5 414,976 + SMa0765 0.49 +0.1 414,976 + SMa0765 0.49 -0.1 415,030 + SMa0765 0.52 +1.5 415,031 - SMa0765 0.52 -0.3 415,031 - SMa0765 0.52 +0.2 415,031 - SMa0765 0.52 +1.3 415,031 - SMa0765 0.52 +0.9 415,033 + SMa0765 0.52 +2.7 415,033 + SMa0765 0.52 +0.6 415,033 + SMa0765 0.52 +0.2 415,033 + SMa0765 0.52 +1.9 415,034 - SMa0765 0.52 +0.6 415,052 + SMa0765 0.53 +0.0 415,066 + SMa0765 0.54 -0.1 415,067 - SMa0765 0.54 -0.2 415,115 - SMa0765 0.57 +0.1 415,145 - SMa0765 0.59 +0.1 415,145 - SMa0765 0.59 -0.1 415,312 + SMa0765 0.69 +1.1 415,312 + SMa0765 0.69 +0.2 415,450 + SMa0765 0.78 -0.3 415,489 + SMa0765 0.80 -0.3 415,490 - SMa0765 0.80 +0.3 415,533 - SMa0765 0.83 +0.1 415,804 + -0.2 415,817 + +0.3 415,929 + SMa0766 0.15 -0.2 415,971 + SMa0766 0.21 -0.4 415,971 + SMa0766 0.21 -0.1 415,971 + SMa0766 0.21 -0.3 416,005 - SMa0766 0.26 +0.1 416,022 + SMa0766 0.28 +0.2 416,023 - SMa0766 0.28 +1.2 416,023 - SMa0766 0.28 -0.1 416,074 - SMa0766 0.35 -0.1 416,082 + SMa0766 0.36 +1.7 416,082 + SMa0766 0.36 +0.7 416,106 + SMa0766 0.39 -0.1 416,106 + SMa0766 0.39 -0.0 416,107 - SMa0766 0.39 -0.6 416,107 - SMa0766 0.39 -1.9 416,172 + SMa0766 0.48 +0.4 416,173 - SMa0766 0.48 -0.4 416,245 - SMa0766 0.58 +0.7 416,245 - SMa0766 0.58 -1.3 416,261 + SMa0766 0.61 -1.7 416,262 - SMa0766 0.61 +0.1 416,262 - SMa0766 0.61 +0.6 416,325 + SMa0766 0.69 -0.3 416,362 + SMa0766 0.74 +0.5 416,362 + SMa0766 0.74 +0.4 416,363 - SMa0766 0.74 -0.2 416,524 - -0.1 416,573 - -0.0 416,573 - -0.1 416,742 + +0.7 416,751 + +0.0 416,752 - +1.9
Or see this region's nucleotide sequence