Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0475 and SMa0476 are separated by 84 nucleotides SMa0476 and SMa0478 are separated by 414 nucleotides SMa0478 and SMa5024 are separated by 408 nucleotides
SMa0475: SMa0475 - TRm17a transposase, at 259,012 to 259,911
SMa0475
SMa0476: SMa0476 - TRm17b transposase, at 259,996 to 260,349
SMa0476
SMa0478: SMa0478 - formate dehydrogenase, at 260,764 to 261,969
SMa0478
SMa5024: SMa5024 - hypothetical protein, at 262,378 to 262,674
SMa5024
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 260.503 kb on + strand at 260.558 kb on - strand at 260.691 kb on + strand at 260.712 kb on + strand at 260.868 kb on - strand at 260.868 kb on - strand at 260.930 kb on + strand, within SMa0478 at 260.965 kb on - strand, within SMa0478 at 261.129 kb on - strand, within SMa0478 at 261.401 kb on + strand, within SMa0478 at 261.402 kb on - strand, within SMa0478 at 261.443 kb on - strand, within SMa0478 at 261.466 kb on - strand, within SMa0478 at 261.467 kb on + strand, within SMa0478 at 261.468 kb on - strand, within SMa0478 at 261.468 kb on - strand, within SMa0478 at 261.468 kb on - strand, within SMa0478 at 261.531 kb on - strand, within SMa0478 at 261.756 kb on + strand, within SMa0478 at 261.938 kb on + strand at 262.110 kb on - strand at 262.187 kb on - strand at 262.356 kb on - strand at 262.393 kb on - strand at 262.457 kb on + strand, within SMa5024 at 262.505 kb on - strand, within SMa5024 at 262.505 kb on - strand, within SMa5024 at 262.510 kb on + strand, within SMa5024 at 262.599 kb on - strand, within SMa5024 at 262.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 260,503 + -1.2 260,558 - -0.6 260,691 + +0.1 260,712 + -0.2 260,868 - -0.1 260,868 - -3.0 260,930 + SMa0478 0.14 +0.5 260,965 - SMa0478 0.17 -0.3 261,129 - SMa0478 0.30 -0.6 261,401 + SMa0478 0.53 +1.3 261,402 - SMa0478 0.53 -0.7 261,443 - SMa0478 0.56 -0.6 261,466 - SMa0478 0.58 +0.1 261,467 + SMa0478 0.58 +0.1 261,468 - SMa0478 0.58 -0.5 261,468 - SMa0478 0.58 -0.3 261,468 - SMa0478 0.58 -0.3 261,531 - SMa0478 0.64 +0.1 261,756 + SMa0478 0.82 +0.1 261,938 + +0.6 262,110 - -0.2 262,187 - +0.3 262,356 - -0.4 262,393 - +0.6 262,457 + SMa5024 0.27 +0.5 262,505 - SMa5024 0.43 +0.8 262,505 - SMa5024 0.43 -0.1 262,510 + SMa5024 0.44 -0.7 262,599 - SMa5024 0.74 -0.7 262,691 + -0.5
Or see this region's nucleotide sequence