Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0002 and SMa0005 overlap by 4 nucleotides SMa0005 and SMa0007 overlap by 23 nucleotides SMa0007 and SMa0009 are separated by 38 nucleotides
SMa0002: SMa0002 - formate dehydrogenase subunit alpha, at 1,353 to 4,457
SMa0002
SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446
SMa0005
SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110
SMa0007
SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069
SMa0009
Position (kb) 4
5
6 Strain fitness (log2 ratio) -1
0
1
2 at 3.635 kb on + strand, within SMa0002 at 3.707 kb on + strand, within SMa0002 at 3.724 kb on - strand, within SMa0002 at 3.773 kb on + strand, within SMa0002 at 3.774 kb on - strand, within SMa0002 at 3.774 kb on - strand, within SMa0002 at 3.774 kb on - strand, within SMa0002 at 3.833 kb on + strand, within SMa0002 at 3.935 kb on + strand, within SMa0002 at 4.106 kb on + strand, within SMa0002 at 4.179 kb on - strand at 4.180 kb on + strand at 4.181 kb on - strand at 4.399 kb on - strand at 4.449 kb on - strand at 4.453 kb on + strand at 4.453 kb on + strand at 4.453 kb on + strand at 4.454 kb on - strand at 4.454 kb on - strand at 4.516 kb on + strand at 4.691 kb on + strand, within SMa0005 at 4.694 kb on + strand, within SMa0005 at 4.695 kb on - strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.697 kb on - strand, within SMa0005 at 4.869 kb on - strand, within SMa0005 at 4.923 kb on + strand, within SMa0005 at 4.976 kb on + strand at 4.977 kb on - strand at 4.977 kb on - strand, within SMa0005 at 5.126 kb on + strand, within SMa0005 at 5.128 kb on + strand, within SMa0005 at 5.129 kb on - strand, within SMa0005 at 5.129 kb on - strand, within SMa0005 at 5.129 kb on - strand, within SMa0005 at 5.144 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.213 kb on + strand, within SMa0005 at 5.213 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.790 kb on + strand, within SMa0007 at 5.790 kb on + strand, within SMa0007 at 5.790 kb on + strand, within SMa0007 at 5.791 kb on - strand, within SMa0007 at 5.791 kb on - strand, within SMa0007 at 5.877 kb on + strand, within SMa0007 at 5.883 kb on + strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.891 kb on + strand, within SMa0007 at 5.891 kb on + strand at 5.891 kb on + strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 6.166 kb on - strand at 6.296 kb on + strand, within SMa0009 at 6.297 kb on - strand, within SMa0009
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 3,635 + SMa0002 0.73 -0.2 3,707 + SMa0002 0.76 +0.0 3,724 - SMa0002 0.76 -0.9 3,773 + SMa0002 0.78 -0.1 3,774 - SMa0002 0.78 +0.2 3,774 - SMa0002 0.78 -0.5 3,774 - SMa0002 0.78 -0.3 3,833 + SMa0002 0.80 -0.4 3,935 + SMa0002 0.83 -0.3 4,106 + SMa0002 0.89 -0.7 4,179 - -0.5 4,180 + -0.2 4,181 - -0.5 4,399 - +0.2 4,449 - -0.7 4,453 + -1.1 4,453 + -1.0 4,453 + +0.0 4,454 - -0.7 4,454 - -0.5 4,516 + -1.0 4,691 + SMa0005 0.24 -0.2 4,694 + SMa0005 0.24 -0.1 4,695 - SMa0005 0.24 -1.0 4,696 + SMa0005 0.24 +1.0 4,696 + SMa0005 0.24 -0.6 4,696 + SMa0005 0.24 +0.1 4,696 + SMa0005 0.24 -0.6 4,696 + SMa0005 0.24 +0.1 4,697 - SMa0005 0.24 -0.2 4,869 - SMa0005 0.42 -0.0 4,923 + SMa0005 0.47 +1.6 4,976 + +0.7 4,977 - -1.0 4,977 - SMa0005 0.53 +0.2 5,126 + SMa0005 0.68 -0.2 5,128 + SMa0005 0.68 -0.4 5,129 - SMa0005 0.68 -0.2 5,129 - SMa0005 0.68 -0.2 5,129 - SMa0005 0.68 -0.2 5,144 + SMa0005 0.69 -0.3 5,180 + SMa0005 0.73 -0.9 5,180 + SMa0005 0.73 -0.3 5,180 + SMa0005 0.73 +1.0 5,180 + SMa0005 0.73 -0.2 5,180 + SMa0005 0.73 -0.1 5,180 + SMa0005 0.73 +1.0 5,180 + SMa0005 0.73 +0.1 5,180 + SMa0005 0.73 -0.3 5,180 + SMa0005 0.73 -0.4 5,181 - SMa0005 0.73 -1.4 5,181 - SMa0005 0.73 +0.2 5,181 - SMa0005 0.73 +0.4 5,181 - SMa0005 0.73 -0.3 5,181 - SMa0005 0.73 -0.7 5,181 - SMa0005 0.73 -0.1 5,181 - SMa0005 0.73 +2.0 5,213 + SMa0005 0.76 -0.5 5,213 + SMa0005 0.76 +0.3 5,279 + SMa0005 0.83 -0.4 5,279 + SMa0005 0.83 -0.5 5,279 + SMa0005 0.83 -0.1 5,280 - SMa0005 0.83 +0.2 5,280 - SMa0005 0.83 -0.6 5,280 - SMa0005 0.83 -0.7 5,790 + SMa0007 0.53 -1.1 5,790 + SMa0007 0.53 +0.2 5,790 + SMa0007 0.53 +1.5 5,791 - SMa0007 0.53 +0.0 5,791 - SMa0007 0.53 +1.0 5,877 + SMa0007 0.66 -0.2 5,883 + SMa0007 0.67 +0.3 5,884 - SMa0007 0.67 -0.2 5,884 - SMa0007 0.67 -1.0 5,884 - SMa0007 0.67 +0.0 5,884 - SMa0007 0.67 -1.4 5,890 - SMa0007 0.68 +0.7 5,890 - SMa0007 0.68 +0.4 5,890 - SMa0007 0.68 -0.3 5,890 - SMa0007 0.68 -0.1 5,891 + SMa0007 0.68 +0.1 5,891 + +1.0 5,891 + SMa0007 0.68 +0.0 5,892 - SMa0007 0.68 -0.3 5,892 - SMa0007 0.68 -0.0 5,892 - SMa0007 0.68 -1.5 5,892 - SMa0007 0.68 +0.7 5,892 - SMa0007 0.68 -0.7 5,892 - SMa0007 0.68 -0.5 5,977 - SMa0007 0.80 -0.9 5,977 - SMa0007 0.80 -0.7 5,977 - SMa0007 0.80 -0.2 6,166 - -1.5 6,296 + SMa0009 0.16 +0.2 6,297 - SMa0009 0.16 -0.2
Or see this region's nucleotide sequence