Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20652

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20650 and SM_b20651 are separated by 27 nucleotidesSM_b20651 and SM_b20652 are separated by 26 nucleotidesSM_b20652 and SM_b20654 are separated by 596 nucleotides SM_b20650: SM_b20650 - long-chain fatty acid CoA ligase, at 1,451,583 to 1,453,130 _b20650 SM_b20651: SM_b20651 - hypothetical protein, at 1,453,158 to 1,453,424 _b20651 SM_b20652: SM_b20652 - asparagine synthetase, at 1,453,451 to 1,455,388 _b20652 SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380 _b20654 Position (kb) 1453 1454 1455 1456Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1452.478 kb on + strand, within SM_b20650at 1452.479 kb on - strand, within SM_b20650at 1452.479 kb on - strand, within SM_b20650at 1452.544 kb on + strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.576 kb on - strand, within SM_b20650at 1452.626 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.856 kb on + strand, within SM_b20650at 1452.856 kb on + strand, within SM_b20650at 1452.856 kb on + strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1453.160 kb on - strandat 1453.160 kb on - strandat 1453.355 kb on - strand, within SM_b20651at 1453.355 kb on - strand, within SM_b20651at 1453.409 kb on + strandat 1453.425 kb on + strandat 1453.654 kb on - strand, within SM_b20652at 1453.903 kb on + strand, within SM_b20652at 1453.903 kb on + strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.905 kb on + strand, within SM_b20652at 1453.905 kb on + strand, within SM_b20652at 1453.935 kb on + strand, within SM_b20652at 1454.011 kb on - strand, within SM_b20652at 1454.175 kb on + strand, within SM_b20652at 1454.175 kb on + strand, within SM_b20652at 1454.263 kb on + strand, within SM_b20652at 1454.263 kb on + strand, within SM_b20652at 1454.279 kb on + strand, within SM_b20652at 1454.349 kb on + strand, within SM_b20652at 1454.605 kb on - strand, within SM_b20652at 1454.605 kb on - strand, within SM_b20652at 1454.697 kb on + strand, within SM_b20652at 1454.697 kb on + strand, within SM_b20652at 1454.697 kb on + strand, within SM_b20652at 1454.697 kb on + strand, within SM_b20652at 1454.697 kb on + strand, within SM_b20652at 1454.739 kb on + strand, within SM_b20652at 1454.840 kb on + strand, within SM_b20652at 1454.841 kb on - strand, within SM_b20652at 1454.849 kb on + strand, within SM_b20652at 1454.849 kb on + strand, within SM_b20652at 1454.849 kb on + strand, within SM_b20652at 1454.849 kb on + strand, within SM_b20652at 1454.849 kb on + strand, within SM_b20652at 1454.850 kb on - strand, within SM_b20652at 1455.098 kb on - strand, within SM_b20652at 1455.156 kb on + strand, within SM_b20652at 1455.157 kb on - strand, within SM_b20652at 1455.157 kb on - strand, within SM_b20652at 1455.157 kb on - strand, within SM_b20652at 1455.346 kb on + strandat 1455.347 kb on - strandat 1455.480 kb on + strandat 1455.675 kb on - strandat 1455.747 kb on + strandat 1455.747 kb on + strandat 1455.747 kb on + strandat 1455.748 kb on - strandat 1455.748 kb on - strandat 1455.792 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.862 kb on - strandat 1455.862 kb on - strandat 1455.862 kb on - strandat 1455.862 kb on - strandat 1455.904 kb on + strandat 1455.904 kb on + strandat 1455.985 kb on - strandat 1456.007 kb on + strandat 1456.048 kb on - strand, within SM_b20654at 1456.048 kb on - strand, within SM_b20654at 1456.094 kb on + strandat 1456.095 kb on - strand, within SM_b20654at 1456.125 kb on + strand, within SM_b20654at 1456.125 kb on + strand, within SM_b20654at 1456.125 kb on + strand, within SM_b20654at 1456.232 kb on + strand, within SM_b20654at 1456.233 kb on - strand, within SM_b20654at 1456.330 kb on - strand, within SM_b20654at 1456.371 kb on + strandat 1456.372 kb on - strandat 1456.378 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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1,452,478 + SM_b20650 0.58 -0.1
1,452,479 - SM_b20650 0.58 -0.1
1,452,479 - SM_b20650 0.58 +0.1
1,452,544 + SM_b20650 0.62 +1.1
1,452,545 - SM_b20650 0.62 +0.3
1,452,545 - SM_b20650 0.62 -0.5
1,452,545 - SM_b20650 0.62 -1.2
1,452,576 - SM_b20650 0.64 +0.1
1,452,626 + SM_b20650 0.67 +0.3
1,452,628 + SM_b20650 0.68 +0.0
1,452,628 + SM_b20650 0.68 -0.1
1,452,628 + SM_b20650 0.68 +1.1
1,452,628 + SM_b20650 0.68 -0.8
1,452,629 - SM_b20650 0.68 -0.0
1,452,629 - SM_b20650 0.68 +0.1
1,452,629 - SM_b20650 0.68 +1.1
1,452,629 - SM_b20650 0.68 -0.2
1,452,856 + SM_b20650 0.82 +0.4
1,452,856 + SM_b20650 0.82 +0.3
1,452,856 + SM_b20650 0.82 +0.0
1,452,857 - SM_b20650 0.82 +0.3
1,452,857 - SM_b20650 0.82 -1.2
1,452,857 - SM_b20650 0.82 -0.7
1,452,857 - SM_b20650 0.82 -0.6
1,453,160 - -0.2
1,453,160 - +0.0
1,453,355 - SM_b20651 0.74 -0.1
1,453,355 - SM_b20651 0.74 -1.5
1,453,409 + +0.6
1,453,425 + +0.3
1,453,654 - SM_b20652 0.10 -0.1
1,453,903 + SM_b20652 0.23 -0.2
1,453,903 + SM_b20652 0.23 +0.4
1,453,904 - SM_b20652 0.23 +0.0
1,453,904 - SM_b20652 0.23 +0.0
1,453,904 - SM_b20652 0.23 +0.0
1,453,904 - SM_b20652 0.23 -1.1
1,453,905 + SM_b20652 0.23 -0.3
1,453,905 + SM_b20652 0.23 -0.3
1,453,935 + SM_b20652 0.25 +1.0
1,454,011 - SM_b20652 0.29 -0.1
1,454,175 + SM_b20652 0.37 +0.2
1,454,175 + SM_b20652 0.37 -0.5
1,454,263 + SM_b20652 0.42 -0.9
1,454,263 + SM_b20652 0.42 -0.4
1,454,279 + SM_b20652 0.43 -1.0
1,454,349 + SM_b20652 0.46 -0.1
1,454,605 - SM_b20652 0.60 +0.3
1,454,605 - SM_b20652 0.60 -0.7
1,454,697 + SM_b20652 0.64 -1.1
1,454,697 + SM_b20652 0.64 +0.2
1,454,697 + SM_b20652 0.64 -1.6
1,454,697 + SM_b20652 0.64 -0.0
1,454,697 + SM_b20652 0.64 -0.6
1,454,739 + SM_b20652 0.66 +1.0
1,454,840 + SM_b20652 0.72 -0.2
1,454,841 - SM_b20652 0.72 +1.2
1,454,849 + SM_b20652 0.72 +0.3
1,454,849 + SM_b20652 0.72 -0.4
1,454,849 + SM_b20652 0.72 -1.0
1,454,849 + SM_b20652 0.72 -0.0
1,454,849 + SM_b20652 0.72 -0.1
1,454,850 - SM_b20652 0.72 -0.2
1,455,098 - SM_b20652 0.85 +1.1
1,455,156 + SM_b20652 0.88 -2.6
1,455,157 - SM_b20652 0.88 -0.7
1,455,157 - SM_b20652 0.88 +0.1
1,455,157 - SM_b20652 0.88 -0.3
1,455,346 + +2.0
1,455,347 - +1.3
1,455,480 + +0.5
1,455,675 - -0.6
1,455,747 + +0.4
1,455,747 + +0.1
1,455,747 + +0.1
1,455,748 - -0.6
1,455,748 - +0.6
1,455,792 + +0.5
1,455,861 + -0.3
1,455,861 + -0.6
1,455,861 + -0.5
1,455,861 + +0.4
1,455,861 + -0.9
1,455,861 + -0.6
1,455,862 - +1.1
1,455,862 - -0.0
1,455,862 - +3.3
1,455,862 - -0.4
1,455,904 + +0.2
1,455,904 + -0.3
1,455,985 - +0.2
1,456,007 + +0.1
1,456,048 - SM_b20654 0.16 +1.2
1,456,048 - SM_b20654 0.16 +0.7
1,456,094 + +0.4
1,456,095 - SM_b20654 0.28 -0.0
1,456,125 + SM_b20654 0.35 -0.2
1,456,125 + SM_b20654 0.35 +0.2
1,456,125 + SM_b20654 0.35 -0.1
1,456,232 + SM_b20654 0.62 +0.5
1,456,233 - SM_b20654 0.63 +0.3
1,456,330 - SM_b20654 0.87 -0.4
1,456,371 + +0.5
1,456,372 - -0.1
1,456,378 + -0.1

Or see this region's nucleotide sequence