Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20333

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20332 and SM_b20333 are separated by 143 nucleotidesSM_b20333 and SM_b20334 are separated by 615 nucleotides SM_b20332: SM_b20332 - hypothetical protein, at 335,644 to 336,585 _b20332 SM_b20333: SM_b20333 - transporter protein, at 336,729 to 338,849 _b20333 SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376 _b20334 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1at 335.747 kb on + strand, within SM_b20332at 335.747 kb on + strand, within SM_b20332at 335.795 kb on - strand, within SM_b20332at 335.887 kb on + strand, within SM_b20332at 335.888 kb on - strand, within SM_b20332at 335.920 kb on + strand, within SM_b20332at 335.920 kb on + strand, within SM_b20332at 335.920 kb on + strand, within SM_b20332at 335.921 kb on - strand, within SM_b20332at 335.921 kb on - strand, within SM_b20332at 335.921 kb on - strand, within SM_b20332at 336.148 kb on + strand, within SM_b20332at 336.202 kb on + strand, within SM_b20332at 336.206 kb on - strand, within SM_b20332at 336.206 kb on - strand, within SM_b20332at 336.206 kb on - strand, within SM_b20332at 336.469 kb on + strand, within SM_b20332at 336.469 kb on + strand, within SM_b20332at 336.470 kb on - strand, within SM_b20332at 336.508 kb on + strandat 336.509 kb on - strandat 336.509 kb on - strandat 336.510 kb on + strandat 336.510 kb on + strandat 336.510 kb on + strandat 336.510 kb on + strandat 336.510 kb on + strandat 336.511 kb on - strandat 336.511 kb on - strandat 336.618 kb on + strandat 336.618 kb on + strandat 336.654 kb on - strandat 336.665 kb on - strandat 336.671 kb on - strandat 336.691 kb on + strandat 336.730 kb on + strandat 336.730 kb on + strandat 336.731 kb on - strandat 336.777 kb on + strandat 336.790 kb on + strandat 336.919 kb on - strandat 336.964 kb on + strand, within SM_b20333at 336.965 kb on - strand, within SM_b20333at 337.473 kb on + strand, within SM_b20333at 337.473 kb on + strand, within SM_b20333at 337.473 kb on + strand, within SM_b20333at 337.526 kb on - strand, within SM_b20333at 337.609 kb on + strand, within SM_b20333at 337.609 kb on + strand, within SM_b20333at 337.609 kb on + strand, within SM_b20333at 337.610 kb on - strand, within SM_b20333at 337.610 kb on - strand, within SM_b20333at 337.765 kb on + strand, within SM_b20333at 337.765 kb on + strand, within SM_b20333at 337.805 kb on - strand, within SM_b20333at 337.810 kb on + strand, within SM_b20333at 337.810 kb on + strand, within SM_b20333at 337.810 kb on + strand, within SM_b20333at 337.811 kb on - strand, within SM_b20333at 337.811 kb on - strand, within SM_b20333at 337.811 kb on - strand, within SM_b20333at 337.846 kb on + strand, within SM_b20333at 337.847 kb on - strand, within SM_b20333at 337.923 kb on + strand, within SM_b20333at 337.924 kb on - strand, within SM_b20333at 337.924 kb on - strand, within SM_b20333at 337.992 kb on - strand, within SM_b20333at 337.992 kb on - strand, within SM_b20333at 338.035 kb on + strand, within SM_b20333at 338.062 kb on + strand, within SM_b20333at 338.062 kb on + strand, within SM_b20333at 338.063 kb on - strand, within SM_b20333at 338.063 kb on - strand, within SM_b20333at 338.063 kb on - strand, within SM_b20333at 338.142 kb on + strand, within SM_b20333at 338.142 kb on + strand, within SM_b20333at 338.143 kb on - strand, within SM_b20333at 338.144 kb on + strand, within SM_b20333at 338.194 kb on + strand, within SM_b20333at 338.221 kb on - strand, within SM_b20333at 338.227 kb on + strand, within SM_b20333at 338.242 kb on + strand, within SM_b20333at 338.269 kb on + strand, within SM_b20333at 338.269 kb on + strand, within SM_b20333at 338.269 kb on + strand, within SM_b20333at 338.270 kb on - strand, within SM_b20333at 338.270 kb on - strand, within SM_b20333at 338.270 kb on - strand, within SM_b20333at 338.271 kb on + strand, within SM_b20333at 338.271 kb on + strand, within SM_b20333at 338.272 kb on - strand, within SM_b20333at 338.272 kb on - strand, within SM_b20333at 338.307 kb on + strand, within SM_b20333at 338.452 kb on + strand, within SM_b20333at 338.452 kb on + strand, within SM_b20333at 338.452 kb on + strand, within SM_b20333at 338.453 kb on - strand, within SM_b20333at 338.453 kb on - strand, within SM_b20333at 338.521 kb on - strand, within SM_b20333at 338.521 kb on - strand, within SM_b20333at 338.558 kb on - strand, within SM_b20333at 338.638 kb on - strandat 338.679 kb on + strandat 338.792 kb on + strandat 338.795 kb on + strandat 339.033 kb on + strandat 339.085 kb on + strandat 339.226 kb on + strandat 339.259 kb on + strandat 339.259 kb on + strandat 339.280 kb on + strandat 339.281 kb on - strandat 339.284 kb on - strandat 339.284 kb on - strandat 339.284 kb on - strandat 339.683 kb on - strand, within SM_b20334at 339.737 kb on + strand, within SM_b20334at 339.737 kb on + strand, within SM_b20334at 339.738 kb on - strand, within SM_b20334at 339.738 kb on - strand, within SM_b20334at 339.739 kb on + strand, within SM_b20334at 339.739 kb on + strand, within SM_b20334at 339.740 kb on - strand, within SM_b20334at 339.740 kb on - strand, within SM_b20334at 339.755 kb on - strand, within SM_b20334at 339.843 kb on + strand, within SM_b20334at 339.844 kb on - strand, within SM_b20334

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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335,747 + SM_b20332 0.11 -0.8
335,747 + SM_b20332 0.11 -0.4
335,795 - SM_b20332 0.16 +0.2
335,887 + SM_b20332 0.26 +0.2
335,888 - SM_b20332 0.26 +0.1
335,920 + SM_b20332 0.29 -0.0
335,920 + SM_b20332 0.29 -0.1
335,920 + SM_b20332 0.29 +0.4
335,921 - SM_b20332 0.29 -0.0
335,921 - SM_b20332 0.29 +0.0
335,921 - SM_b20332 0.29 -0.1
336,148 + SM_b20332 0.54 -0.1
336,202 + SM_b20332 0.59 -0.3
336,206 - SM_b20332 0.60 -0.5
336,206 - SM_b20332 0.60 +0.8
336,206 - SM_b20332 0.60 -0.1
336,469 + SM_b20332 0.88 -0.0
336,469 + SM_b20332 0.88 -0.6
336,470 - SM_b20332 0.88 +0.6
336,508 + +0.1
336,509 - +0.1
336,509 - +0.6
336,510 + +0.6
336,510 + +0.2
336,510 + -0.3
336,510 + -0.1
336,510 + +0.1
336,511 - +0.6
336,511 - -1.2
336,618 + +0.4
336,618 + -0.6
336,654 - +0.4
336,665 - +0.3
336,671 - +0.3
336,691 + +0.8
336,730 + -1.4
336,730 + +0.5
336,731 - +0.3
336,777 + +0.1
336,790 + -0.2
336,919 - -0.2
336,964 + SM_b20333 0.11 +0.2
336,965 - SM_b20333 0.11 -0.6
337,473 + SM_b20333 0.35 -0.3
337,473 + SM_b20333 0.35 -1.5
337,473 + SM_b20333 0.35 -1.3
337,526 - SM_b20333 0.38 -1.4
337,609 + SM_b20333 0.41 -1.1
337,609 + SM_b20333 0.41 -0.0
337,609 + SM_b20333 0.41 -1.0
337,610 - SM_b20333 0.42 -0.0
337,610 - SM_b20333 0.42 +0.8
337,765 + SM_b20333 0.49 -1.1
337,765 + SM_b20333 0.49 -0.9
337,805 - SM_b20333 0.51 -0.3
337,810 + SM_b20333 0.51 -0.9
337,810 + SM_b20333 0.51 +0.7
337,810 + SM_b20333 0.51 -1.4
337,811 - SM_b20333 0.51 -0.1
337,811 - SM_b20333 0.51 -1.2
337,811 - SM_b20333 0.51 -0.0
337,846 + SM_b20333 0.53 -0.6
337,847 - SM_b20333 0.53 -0.2
337,923 + SM_b20333 0.56 -0.3
337,924 - SM_b20333 0.56 +0.4
337,924 - SM_b20333 0.56 -1.4
337,992 - SM_b20333 0.60 -0.8
337,992 - SM_b20333 0.60 +0.4
338,035 + SM_b20333 0.62 -1.2
338,062 + SM_b20333 0.63 -0.8
338,062 + SM_b20333 0.63 -1.5
338,063 - SM_b20333 0.63 -1.1
338,063 - SM_b20333 0.63 -0.9
338,063 - SM_b20333 0.63 -0.9
338,142 + SM_b20333 0.67 -1.2
338,142 + SM_b20333 0.67 -1.0
338,143 - SM_b20333 0.67 -0.1
338,144 + SM_b20333 0.67 +0.4
338,194 + SM_b20333 0.69 -0.4
338,221 - SM_b20333 0.70 -0.7
338,227 + SM_b20333 0.71 -0.8
338,242 + SM_b20333 0.71 -0.6
338,269 + SM_b20333 0.73 -1.2
338,269 + SM_b20333 0.73 -0.7
338,269 + SM_b20333 0.73 -0.4
338,270 - SM_b20333 0.73 -0.7
338,270 - SM_b20333 0.73 -0.9
338,270 - SM_b20333 0.73 -0.6
338,271 + SM_b20333 0.73 -1.1
338,271 + SM_b20333 0.73 -0.4
338,272 - SM_b20333 0.73 -1.2
338,272 - SM_b20333 0.73 -0.5
338,307 + SM_b20333 0.74 -1.6
338,452 + SM_b20333 0.81 -0.3
338,452 + SM_b20333 0.81 -0.9
338,452 + SM_b20333 0.81 -2.9
338,453 - SM_b20333 0.81 -0.8
338,453 - SM_b20333 0.81 -0.9
338,521 - SM_b20333 0.84 -1.8
338,521 - SM_b20333 0.84 -1.0
338,558 - SM_b20333 0.86 -1.2
338,638 - -0.7
338,679 + +0.8
338,792 + +0.3
338,795 + -0.7
339,033 + +0.5
339,085 + -0.6
339,226 + -0.4
339,259 + -0.1
339,259 + -0.2
339,280 + +0.3
339,281 - +0.2
339,284 - +1.5
339,284 - +0.0
339,284 - +0.1
339,683 - SM_b20334 0.24 +0.0
339,737 + SM_b20334 0.30 -0.4
339,737 + SM_b20334 0.30 -0.6
339,738 - SM_b20334 0.30 -0.1
339,738 - SM_b20334 0.30 -0.2
339,739 + SM_b20334 0.30 -0.1
339,739 + SM_b20334 0.30 -0.4
339,740 - SM_b20334 0.30 +0.4
339,740 - SM_b20334 0.30 +0.4
339,755 - SM_b20334 0.32 +0.5
339,843 + SM_b20334 0.41 -0.5
339,844 - SM_b20334 0.42 -0.0

Or see this region's nucleotide sequence