Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23985 and RR42_RS23990 are separated by 550 nucleotides RR42_RS23990 and RR42_RS23995 are separated by 485 nucleotides
RR42_RS23985: RR42_RS23985 - hypothetical protein, at 707,225 to 707,740
_RS23985
RR42_RS23990: RR42_RS23990 - hypothetical protein, at 708,291 to 708,755
_RS23990
RR42_RS23995: RR42_RS23995 - hypothetical protein, at 709,241 to 709,486
_RS23995
Position (kb) 708
709 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.318 kb on + strand, within RR42_RS23985 at 707.318 kb on + strand, within RR42_RS23985 at 707.330 kb on + strand, within RR42_RS23985 at 707.331 kb on - strand, within RR42_RS23985 at 707.480 kb on - strand, within RR42_RS23985 at 707.812 kb on + strand at 707.813 kb on - strand at 707.813 kb on - strand at 707.849 kb on + strand at 707.849 kb on + strand at 708.040 kb on + strand at 708.040 kb on + strand at 708.040 kb on + strand at 708.064 kb on + strand at 708.065 kb on - strand at 708.085 kb on + strand at 708.128 kb on + strand at 708.140 kb on + strand at 708.140 kb on + strand at 708.140 kb on + strand at 708.141 kb on - strand at 708.141 kb on - strand at 708.141 kb on - strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.197 kb on - strand at 708.197 kb on - strand at 708.197 kb on - strand at 708.197 kb on - strand at 708.261 kb on + strand at 708.262 kb on - strand at 708.271 kb on + strand at 708.271 kb on + strand at 708.272 kb on - strand at 708.272 kb on - strand at 708.294 kb on + strand at 708.294 kb on + strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.314 kb on + strand at 708.455 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.485 kb on - strand, within RR42_RS23990 at 708.525 kb on + strand, within RR42_RS23990 at 708.526 kb on - strand, within RR42_RS23990 at 708.559 kb on - strand, within RR42_RS23990 at 708.559 kb on - strand, within RR42_RS23990 at 708.593 kb on + strand, within RR42_RS23990 at 708.678 kb on - strand, within RR42_RS23990 at 708.775 kb on - strand at 708.978 kb on + strand at 708.984 kb on + strand at 708.985 kb on - strand at 709.058 kb on - strand at 709.177 kb on + strand at 709.177 kb on + strand at 709.178 kb on - strand at 709.223 kb on + strand at 709.279 kb on - strand, within RR42_RS23995 at 709.295 kb on + strand, within RR42_RS23995 at 709.295 kb on + strand, within RR42_RS23995 at 709.337 kb on + strand, within RR42_RS23995 at 709.337 kb on + strand, within RR42_RS23995 at 709.567 kb on + strand at 709.568 kb on - strand at 709.655 kb on + strand at 709.707 kb on - strand at 709.742 kb on + strand at 709.743 kb on - strand at 709.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 707,318 + RR42_RS23985 0.18 +0.1 707,318 + RR42_RS23985 0.18 -0.3 707,330 + RR42_RS23985 0.20 -0.1 707,331 - RR42_RS23985 0.21 -0.2 707,480 - RR42_RS23985 0.49 -0.6 707,812 + -0.1 707,813 - +0.7 707,813 - +0.1 707,849 + +0.1 707,849 + +0.6 708,040 + -0.2 708,040 + -0.6 708,040 + -1.1 708,064 + +0.8 708,065 - +0.6 708,085 + +0.9 708,128 + +0.0 708,140 + -0.3 708,140 + -1.9 708,140 + +0.6 708,141 - -1.1 708,141 - +0.3 708,141 - -0.5 708,196 + +0.2 708,196 + -1.9 708,196 + -1.1 708,196 + +0.3 708,196 + +0.4 708,197 - -0.2 708,197 - -0.9 708,197 - +0.9 708,197 - -0.8 708,261 + -0.1 708,262 - +1.2 708,271 + +0.7 708,271 + -1.5 708,272 - -0.2 708,272 - +0.9 708,294 + -0.6 708,294 + -0.0 708,295 - -0.6 708,295 - +0.6 708,295 - -1.0 708,295 - -0.4 708,314 + +0.4 708,455 + RR42_RS23990 0.35 -0.3 708,484 + RR42_RS23990 0.42 +0.6 708,484 + RR42_RS23990 0.42 -0.1 708,484 + RR42_RS23990 0.42 -0.3 708,485 - RR42_RS23990 0.42 +1.2 708,525 + RR42_RS23990 0.50 -0.2 708,526 - RR42_RS23990 0.51 -0.4 708,559 - RR42_RS23990 0.58 +2.5 708,559 - RR42_RS23990 0.58 -0.4 708,593 + RR42_RS23990 0.65 +0.0 708,678 - RR42_RS23990 0.83 +0.9 708,775 - +0.1 708,978 + +0.9 708,984 + +0.3 708,985 - -0.3 709,058 - +0.2 709,177 + +0.4 709,177 + +1.0 709,178 - +0.5 709,223 + +0.9 709,279 - RR42_RS23995 0.15 +0.9 709,295 + RR42_RS23995 0.22 +0.6 709,295 + RR42_RS23995 0.22 -0.3 709,337 + RR42_RS23995 0.39 +1.8 709,337 + RR42_RS23995 0.39 +0.9 709,567 + -0.7 709,568 - -0.8 709,655 + +0.5 709,707 - +0.2 709,742 + +0.2 709,743 - -2.6 709,753 - +0.0
Or see this region's nucleotide sequence