Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13425 and RR42_RS13430 are separated by 83 nucleotides RR42_RS13430 and RR42_RS13435 are separated by 184 nucleotides
RR42_RS13425: RR42_RS13425 - hypothetical protein, at 2,895,391 to 2,896,104
_RS13425
RR42_RS13430: RR42_RS13430 - exopolyphosphatase, at 2,896,188 to 2,897,720
_RS13430
RR42_RS13435: RR42_RS13435 - polyphosphate kinase, at 2,897,905 to 2,899,989
_RS13435
Position (kb)
2896
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2895.208 kb on + strand at 2895.208 kb on + strand at 2895.208 kb on + strand at 2895.209 kb on - strand at 2895.209 kb on - strand at 2895.245 kb on + strand at 2895.246 kb on - strand at 2895.419 kb on + strand at 2895.420 kb on - strand at 2895.443 kb on - strand at 2895.443 kb on - strand at 2895.443 kb on - strand at 2895.507 kb on + strand, within RR42_RS13425 at 2895.507 kb on + strand, within RR42_RS13425 at 2895.507 kb on + strand, within RR42_RS13425 at 2895.508 kb on - strand, within RR42_RS13425 at 2895.508 kb on - strand, within RR42_RS13425 at 2895.521 kb on - strand, within RR42_RS13425 at 2895.620 kb on - strand, within RR42_RS13425 at 2895.707 kb on - strand, within RR42_RS13425 at 2895.754 kb on + strand, within RR42_RS13425 at 2895.878 kb on - strand, within RR42_RS13425 at 2896.195 kb on + strand at 2896.196 kb on - strand at 2896.208 kb on - strand at 2896.532 kb on + strand, within RR42_RS13430 at 2896.751 kb on + strand, within RR42_RS13430 at 2896.752 kb on - strand, within RR42_RS13430 at 2896.752 kb on - strand, within RR42_RS13430 at 2896.752 kb on - strand, within RR42_RS13430 at 2897.156 kb on - strand, within RR42_RS13430 at 2897.212 kb on + strand, within RR42_RS13430 at 2897.212 kb on + strand, within RR42_RS13430 at 2897.240 kb on - strand, within RR42_RS13430 at 2897.335 kb on + strand, within RR42_RS13430 at 2897.335 kb on + strand, within RR42_RS13430 at 2897.441 kb on + strand, within RR42_RS13430 at 2897.441 kb on + strand, within RR42_RS13430 at 2897.442 kb on - strand, within RR42_RS13430 at 2897.442 kb on - strand, within RR42_RS13430 at 2897.545 kb on + strand, within RR42_RS13430 at 2897.607 kb on + strand at 2897.607 kb on + strand at 2897.607 kb on + strand at 2897.740 kb on + strand at 2897.765 kb on + strand at 2897.766 kb on - strand at 2897.766 kb on - strand at 2897.766 kb on - strand at 2897.799 kb on - strand at 2897.805 kb on + strand at 2897.865 kb on + strand at 2897.904 kb on + strand at 2897.904 kb on + strand at 2897.904 kb on + strand at 2897.965 kb on - strand at 2898.030 kb on + strand at 2898.031 kb on - strand at 2898.031 kb on - strand at 2898.145 kb on + strand, within RR42_RS13435 at 2898.399 kb on - strand, within RR42_RS13435 at 2898.506 kb on - strand, within RR42_RS13435 at 2898.564 kb on + strand, within RR42_RS13435 at 2898.564 kb on + strand, within RR42_RS13435 at 2898.584 kb on - strand, within RR42_RS13435 at 2898.584 kb on - strand, within RR42_RS13435 at 2898.584 kb on - strand, within RR42_RS13435 at 2898.633 kb on + strand, within RR42_RS13435
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 2,895,208 + +0.1 2,895,208 + -0.6 2,895,208 + -1.2 2,895,209 - -0.2 2,895,209 - +0.5 2,895,245 + -0.1 2,895,246 - -0.0 2,895,419 + +1.2 2,895,420 - -0.4 2,895,443 - -0.5 2,895,443 - -2.5 2,895,443 - -0.8 2,895,507 + RR42_RS13425 0.16 +0.4 2,895,507 + RR42_RS13425 0.16 -0.0 2,895,507 + RR42_RS13425 0.16 +1.1 2,895,508 - RR42_RS13425 0.16 -2.6 2,895,508 - RR42_RS13425 0.16 -1.0 2,895,521 - RR42_RS13425 0.18 +0.6 2,895,620 - RR42_RS13425 0.32 -0.3 2,895,707 - RR42_RS13425 0.44 +2.8 2,895,754 + RR42_RS13425 0.51 +0.5 2,895,878 - RR42_RS13425 0.68 -0.2 2,896,195 + +0.0 2,896,196 - -0.6 2,896,208 - +0.6 2,896,532 + RR42_RS13430 0.22 +1.3 2,896,751 + RR42_RS13430 0.37 +0.1 2,896,752 - RR42_RS13430 0.37 -0.3 2,896,752 - RR42_RS13430 0.37 +0.5 2,896,752 - RR42_RS13430 0.37 -1.5 2,897,156 - RR42_RS13430 0.63 +0.8 2,897,212 + RR42_RS13430 0.67 +0.2 2,897,212 + RR42_RS13430 0.67 +0.7 2,897,240 - RR42_RS13430 0.69 +0.7 2,897,335 + RR42_RS13430 0.75 +0.0 2,897,335 + RR42_RS13430 0.75 +0.6 2,897,441 + RR42_RS13430 0.82 -0.5 2,897,441 + RR42_RS13430 0.82 +0.7 2,897,442 - RR42_RS13430 0.82 -1.1 2,897,442 - RR42_RS13430 0.82 +0.3 2,897,545 + RR42_RS13430 0.89 +0.8 2,897,607 + +0.4 2,897,607 + -0.2 2,897,607 + -1.6 2,897,740 + -0.3 2,897,765 + -1.5 2,897,766 - -0.3 2,897,766 - +0.3 2,897,766 - +1.0 2,897,799 - -0.3 2,897,805 + +1.4 2,897,865 + +0.2 2,897,904 + -0.2 2,897,904 + -0.1 2,897,904 + +0.1 2,897,965 - -0.1 2,898,030 + +0.6 2,898,031 - +0.2 2,898,031 - +0.2 2,898,145 + RR42_RS13435 0.12 +0.7 2,898,399 - RR42_RS13435 0.24 +0.8 2,898,506 - RR42_RS13435 0.29 +0.2 2,898,564 + RR42_RS13435 0.32 +0.8 2,898,564 + RR42_RS13435 0.32 +0.1 2,898,584 - RR42_RS13435 0.33 -0.5 2,898,584 - RR42_RS13435 0.33 -0.3 2,898,584 - RR42_RS13435 0.33 -1.2 2,898,633 + RR42_RS13435 0.35 -2.1
Or see this region's nucleotide sequence