Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13430

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13425 and RR42_RS13430 are separated by 83 nucleotidesRR42_RS13430 and RR42_RS13435 are separated by 184 nucleotides RR42_RS13425: RR42_RS13425 - hypothetical protein, at 2,895,391 to 2,896,104 _RS13425 RR42_RS13430: RR42_RS13430 - exopolyphosphatase, at 2,896,188 to 2,897,720 _RS13430 RR42_RS13435: RR42_RS13435 - polyphosphate kinase, at 2,897,905 to 2,899,989 _RS13435 Position (kb) 2896 2897 2898Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2895.208 kb on + strandat 2895.208 kb on + strandat 2895.208 kb on + strandat 2895.209 kb on - strandat 2895.209 kb on - strandat 2895.245 kb on + strandat 2895.246 kb on - strandat 2895.419 kb on + strandat 2895.420 kb on - strandat 2895.443 kb on - strandat 2895.443 kb on - strandat 2895.443 kb on - strandat 2895.507 kb on + strand, within RR42_RS13425at 2895.507 kb on + strand, within RR42_RS13425at 2895.507 kb on + strand, within RR42_RS13425at 2895.508 kb on - strand, within RR42_RS13425at 2895.508 kb on - strand, within RR42_RS13425at 2895.521 kb on - strand, within RR42_RS13425at 2895.620 kb on - strand, within RR42_RS13425at 2895.707 kb on - strand, within RR42_RS13425at 2895.754 kb on + strand, within RR42_RS13425at 2895.878 kb on - strand, within RR42_RS13425at 2896.195 kb on + strandat 2896.196 kb on - strandat 2896.208 kb on - strandat 2896.532 kb on + strand, within RR42_RS13430at 2896.751 kb on + strand, within RR42_RS13430at 2896.752 kb on - strand, within RR42_RS13430at 2896.752 kb on - strand, within RR42_RS13430at 2896.752 kb on - strand, within RR42_RS13430at 2897.156 kb on - strand, within RR42_RS13430at 2897.212 kb on + strand, within RR42_RS13430at 2897.212 kb on + strand, within RR42_RS13430at 2897.240 kb on - strand, within RR42_RS13430at 2897.335 kb on + strand, within RR42_RS13430at 2897.335 kb on + strand, within RR42_RS13430at 2897.441 kb on + strand, within RR42_RS13430at 2897.441 kb on + strand, within RR42_RS13430at 2897.442 kb on - strand, within RR42_RS13430at 2897.442 kb on - strand, within RR42_RS13430at 2897.545 kb on + strand, within RR42_RS13430at 2897.607 kb on + strandat 2897.607 kb on + strandat 2897.607 kb on + strandat 2897.740 kb on + strandat 2897.765 kb on + strandat 2897.766 kb on - strandat 2897.766 kb on - strandat 2897.766 kb on - strandat 2897.799 kb on - strandat 2897.805 kb on + strandat 2897.865 kb on + strandat 2897.904 kb on + strandat 2897.904 kb on + strandat 2897.904 kb on + strandat 2897.965 kb on - strandat 2898.030 kb on + strandat 2898.031 kb on - strandat 2898.031 kb on - strandat 2898.145 kb on + strand, within RR42_RS13435at 2898.399 kb on - strand, within RR42_RS13435at 2898.506 kb on - strand, within RR42_RS13435at 2898.564 kb on + strand, within RR42_RS13435at 2898.564 kb on + strand, within RR42_RS13435at 2898.584 kb on - strand, within RR42_RS13435at 2898.584 kb on - strand, within RR42_RS13435at 2898.584 kb on - strand, within RR42_RS13435at 2898.633 kb on + strand, within RR42_RS13435

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,895,208 + +0.1
2,895,208 + -0.6
2,895,208 + -1.2
2,895,209 - -0.2
2,895,209 - +0.5
2,895,245 + -0.1
2,895,246 - -0.0
2,895,419 + +1.2
2,895,420 - -0.4
2,895,443 - -0.5
2,895,443 - -2.5
2,895,443 - -0.8
2,895,507 + RR42_RS13425 0.16 +0.4
2,895,507 + RR42_RS13425 0.16 -0.0
2,895,507 + RR42_RS13425 0.16 +1.1
2,895,508 - RR42_RS13425 0.16 -2.6
2,895,508 - RR42_RS13425 0.16 -1.0
2,895,521 - RR42_RS13425 0.18 +0.6
2,895,620 - RR42_RS13425 0.32 -0.3
2,895,707 - RR42_RS13425 0.44 +2.8
2,895,754 + RR42_RS13425 0.51 +0.5
2,895,878 - RR42_RS13425 0.68 -0.2
2,896,195 + +0.0
2,896,196 - -0.6
2,896,208 - +0.6
2,896,532 + RR42_RS13430 0.22 +1.3
2,896,751 + RR42_RS13430 0.37 +0.1
2,896,752 - RR42_RS13430 0.37 -0.3
2,896,752 - RR42_RS13430 0.37 +0.5
2,896,752 - RR42_RS13430 0.37 -1.5
2,897,156 - RR42_RS13430 0.63 +0.8
2,897,212 + RR42_RS13430 0.67 +0.2
2,897,212 + RR42_RS13430 0.67 +0.7
2,897,240 - RR42_RS13430 0.69 +0.7
2,897,335 + RR42_RS13430 0.75 +0.0
2,897,335 + RR42_RS13430 0.75 +0.6
2,897,441 + RR42_RS13430 0.82 -0.5
2,897,441 + RR42_RS13430 0.82 +0.7
2,897,442 - RR42_RS13430 0.82 -1.1
2,897,442 - RR42_RS13430 0.82 +0.3
2,897,545 + RR42_RS13430 0.89 +0.8
2,897,607 + +0.4
2,897,607 + -0.2
2,897,607 + -1.6
2,897,740 + -0.3
2,897,765 + -1.5
2,897,766 - -0.3
2,897,766 - +0.3
2,897,766 - +1.0
2,897,799 - -0.3
2,897,805 + +1.4
2,897,865 + +0.2
2,897,904 + -0.2
2,897,904 + -0.1
2,897,904 + +0.1
2,897,965 - -0.1
2,898,030 + +0.6
2,898,031 - +0.2
2,898,031 - +0.2
2,898,145 + RR42_RS13435 0.12 +0.7
2,898,399 - RR42_RS13435 0.24 +0.8
2,898,506 - RR42_RS13435 0.29 +0.2
2,898,564 + RR42_RS13435 0.32 +0.8
2,898,564 + RR42_RS13435 0.32 +0.1
2,898,584 - RR42_RS13435 0.33 -0.5
2,898,584 - RR42_RS13435 0.33 -0.3
2,898,584 - RR42_RS13435 0.33 -1.2
2,898,633 + RR42_RS13435 0.35 -2.1

Or see this region's nucleotide sequence