Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11930

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11925 and RR42_RS11930 are separated by 210 nucleotidesRR42_RS11930 and RR42_RS11935 are separated by 94 nucleotides RR42_RS11925: RR42_RS11925 - hypothetical protein, at 2,555,845 to 2,556,825 _RS11925 RR42_RS11930: RR42_RS11930 - succinyldiaminopimelate aminotransferase, at 2,557,036 to 2,558,253 _RS11930 RR42_RS11935: RR42_RS11935 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 2,558,348 to 2,559,175 _RS11935 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -2 -1 0 1at 2556.077 kb on + strand, within RR42_RS11925at 2556.100 kb on + strand, within RR42_RS11925at 2556.101 kb on - strand, within RR42_RS11925at 2556.225 kb on - strand, within RR42_RS11925at 2556.225 kb on - strand, within RR42_RS11925at 2556.413 kb on - strand, within RR42_RS11925at 2556.436 kb on + strand, within RR42_RS11925at 2556.492 kb on - strand, within RR42_RS11925at 2556.492 kb on - strand, within RR42_RS11925at 2556.538 kb on + strand, within RR42_RS11925at 2556.539 kb on - strand, within RR42_RS11925at 2556.990 kb on + strandat 2556.992 kb on + strandat 2556.992 kb on + strandat 2556.992 kb on + strandat 2557.066 kb on + strandat 2557.244 kb on + strand, within RR42_RS11930at 2557.244 kb on + strand, within RR42_RS11930at 2557.244 kb on + strand, within RR42_RS11930at 2557.244 kb on + strand, within RR42_RS11930at 2557.244 kb on + strand, within RR42_RS11930at 2557.244 kb on + strand, within RR42_RS11930at 2557.423 kb on + strand, within RR42_RS11930at 2557.669 kb on + strand, within RR42_RS11930at 2557.669 kb on + strand, within RR42_RS11930at 2557.853 kb on + strand, within RR42_RS11930at 2557.853 kb on + strand, within RR42_RS11930at 2557.860 kb on + strand, within RR42_RS11930at 2557.860 kb on + strand, within RR42_RS11930at 2557.860 kb on + strand, within RR42_RS11930at 2557.864 kb on + strand, within RR42_RS11930at 2557.864 kb on + strand, within RR42_RS11930at 2557.864 kb on + strand, within RR42_RS11930at 2558.307 kb on + strandat 2558.317 kb on + strandat 2558.317 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,556,077 + RR42_RS11925 0.24 -1.3
2,556,100 + RR42_RS11925 0.26 +1.2
2,556,101 - RR42_RS11925 0.26 +0.6
2,556,225 - RR42_RS11925 0.39 -1.9
2,556,225 - RR42_RS11925 0.39 +0.1
2,556,413 - RR42_RS11925 0.58 +0.4
2,556,436 + RR42_RS11925 0.60 +0.3
2,556,492 - RR42_RS11925 0.66 -0.2
2,556,492 - RR42_RS11925 0.66 +1.5
2,556,538 + RR42_RS11925 0.71 -0.3
2,556,539 - RR42_RS11925 0.71 -0.1
2,556,990 + -0.2
2,556,992 + -0.0
2,556,992 + +0.5
2,556,992 + +0.3
2,557,066 + -0.7
2,557,244 + RR42_RS11930 0.17 -1.1
2,557,244 + RR42_RS11930 0.17 -0.8
2,557,244 + RR42_RS11930 0.17 +0.6
2,557,244 + RR42_RS11930 0.17 -0.9
2,557,244 + RR42_RS11930 0.17 -0.4
2,557,244 + RR42_RS11930 0.17 +0.3
2,557,423 + RR42_RS11930 0.32 -0.2
2,557,669 + RR42_RS11930 0.52 +0.1
2,557,669 + RR42_RS11930 0.52 -0.7
2,557,853 + RR42_RS11930 0.67 -0.6
2,557,853 + RR42_RS11930 0.67 -0.2
2,557,860 + RR42_RS11930 0.68 -0.6
2,557,860 + RR42_RS11930 0.68 +0.3
2,557,860 + RR42_RS11930 0.68 +0.1
2,557,864 + RR42_RS11930 0.68 -0.1
2,557,864 + RR42_RS11930 0.68 -0.6
2,557,864 + RR42_RS11930 0.68 +0.1
2,558,307 + -0.1
2,558,317 + -0.0
2,558,317 + -0.0

Or see this region's nucleotide sequence