Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11740

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11730 and RR42_RS11740 are separated by 795 nucleotidesRR42_RS11740 and RR42_RS11745 overlap by 26 nucleotidesRR42_RS11745 and RR42_RS11750 are separated by 141 nucleotides RR42_RS11730: RR42_RS11730 - DNA-binding protein, at 2,509,772 to 2,510,239 _RS11730 RR42_RS11740: RR42_RS11740 - GMP synthase, at 2,511,035 to 2,512,654 _RS11740 RR42_RS11745: RR42_RS11745 - membrane protein, at 2,512,629 to 2,513,231 _RS11745 RR42_RS11750: RR42_RS11750 - inosine-5-monophosphate dehydrogenase, at 2,513,373 to 2,514,836 _RS11750 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -1 0 1at 2510.347 kb on + strandat 2510.348 kb on - strandat 2510.348 kb on - strandat 2510.348 kb on - strandat 2510.378 kb on + strandat 2510.482 kb on - strandat 2510.482 kb on - strandat 2510.482 kb on - strandat 2510.521 kb on + strandat 2510.521 kb on + strandat 2510.521 kb on + strandat 2510.749 kb on + strandat 2510.749 kb on + strandat 2510.750 kb on - strandat 2510.827 kb on - strandat 2510.827 kb on - strandat 2510.830 kb on + strandat 2510.831 kb on - strandat 2510.831 kb on - strandat 2510.956 kb on + strandat 2510.957 kb on - strandat 2510.957 kb on - strandat 2510.957 kb on - strandat 2510.957 kb on - strandat 2512.953 kb on - strand, within RR42_RS11745at 2512.953 kb on - strand, within RR42_RS11745at 2512.953 kb on - strand, within RR42_RS11745at 2512.953 kb on - strand, within RR42_RS11745at 2513.025 kb on - strand, within RR42_RS11745at 2513.025 kb on - strand, within RR42_RS11745at 2513.025 kb on - strand, within RR42_RS11745at 2513.099 kb on - strand, within RR42_RS11745at 2513.136 kb on - strand, within RR42_RS11745at 2513.136 kb on - strand, within RR42_RS11745at 2513.136 kb on - strand, within RR42_RS11745at 2513.224 kb on - strandat 2513.224 kb on - strandat 2513.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,510,347 + +1.3
2,510,348 - -0.1
2,510,348 - +0.9
2,510,348 - -1.0
2,510,378 + +0.3
2,510,482 - -0.1
2,510,482 - -1.2
2,510,482 - -0.0
2,510,521 + -0.4
2,510,521 + -0.7
2,510,521 + +0.2
2,510,749 + +0.2
2,510,749 + +0.2
2,510,750 - -0.8
2,510,827 - +0.2
2,510,827 - -0.9
2,510,830 + -0.6
2,510,831 - -0.8
2,510,831 - +1.0
2,510,956 + -1.1
2,510,957 - +0.7
2,510,957 - -1.5
2,510,957 - -0.7
2,510,957 - +1.1
2,512,953 - RR42_RS11745 0.54 +0.0
2,512,953 - RR42_RS11745 0.54 -0.1
2,512,953 - RR42_RS11745 0.54 -0.8
2,512,953 - RR42_RS11745 0.54 +0.2
2,513,025 - RR42_RS11745 0.66 +0.2
2,513,025 - RR42_RS11745 0.66 +0.7
2,513,025 - RR42_RS11745 0.66 -0.0
2,513,099 - RR42_RS11745 0.78 -0.5
2,513,136 - RR42_RS11745 0.84 -0.3
2,513,136 - RR42_RS11745 0.84 -0.1
2,513,136 - RR42_RS11745 0.84 +0.6
2,513,224 - -0.3
2,513,224 - -0.3
2,513,384 - -0.9

Or see this region's nucleotide sequence