Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09050

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09045 and RR42_RS09050 are separated by 72 nucleotidesRR42_RS09050 and RR42_RS09055 overlap by 14 nucleotidesRR42_RS09055 and RR42_RS09060 are separated by 12 nucleotides RR42_RS09045: RR42_RS09045 - peptidylprolyl isomerase, at 1,901,200 to 1,903,149 _RS09045 RR42_RS09050: RR42_RS09050 - arylesterase, at 1,903,222 to 1,903,917 _RS09050 RR42_RS09055: RR42_RS09055 - ABC transporter, at 1,903,904 to 1,904,602 _RS09055 RR42_RS09060: RR42_RS09060 - glucose-6-phosphate isomerase, at 1,904,615 to 1,906,249 _RS09060 Position (kb) 1903 1904Strain fitness (log2 ratio) -2 -1 0 1at 1902.245 kb on - strand, within RR42_RS09045at 1902.289 kb on + strand, within RR42_RS09045at 1902.403 kb on + strand, within RR42_RS09045at 1902.432 kb on + strand, within RR42_RS09045at 1902.433 kb on - strand, within RR42_RS09045at 1902.439 kb on + strand, within RR42_RS09045at 1902.440 kb on - strand, within RR42_RS09045at 1902.440 kb on - strand, within RR42_RS09045at 1902.440 kb on - strand, within RR42_RS09045at 1902.724 kb on + strand, within RR42_RS09045at 1902.724 kb on + strand, within RR42_RS09045at 1902.725 kb on - strand, within RR42_RS09045at 1902.725 kb on - strand, within RR42_RS09045at 1902.726 kb on + strand, within RR42_RS09045at 1902.727 kb on - strand, within RR42_RS09045at 1902.727 kb on - strand, within RR42_RS09045at 1902.910 kb on + strand, within RR42_RS09045at 1902.910 kb on + strand, within RR42_RS09045at 1902.910 kb on + strand, within RR42_RS09045at 1902.910 kb on + strand, within RR42_RS09045at 1902.910 kb on + strand, within RR42_RS09045at 1902.911 kb on - strand, within RR42_RS09045at 1902.940 kb on + strand, within RR42_RS09045at 1902.949 kb on + strand, within RR42_RS09045at 1902.950 kb on - strand, within RR42_RS09045at 1903.058 kb on - strandat 1903.058 kb on - strandat 1903.058 kb on - strandat 1903.058 kb on - strandat 1903.058 kb on - strandat 1903.058 kb on - strandat 1903.223 kb on + strandat 1903.223 kb on + strandat 1903.224 kb on - strandat 1903.224 kb on - strandat 1903.231 kb on - strandat 1903.416 kb on - strand, within RR42_RS09050at 1903.452 kb on - strand, within RR42_RS09050at 1903.683 kb on + strand, within RR42_RS09050at 1903.683 kb on + strand, within RR42_RS09050at 1903.684 kb on - strand, within RR42_RS09050at 1903.684 kb on - strand, within RR42_RS09050at 1904.325 kb on - strand, within RR42_RS09055at 1904.603 kb on + strandat 1904.704 kb on + strandat 1904.705 kb on - strandat 1904.811 kb on + strand, within RR42_RS09060

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,902,245 - RR42_RS09045 0.54 +0.3
1,902,289 + RR42_RS09045 0.56 -0.4
1,902,403 + RR42_RS09045 0.62 +0.8
1,902,432 + RR42_RS09045 0.63 +0.2
1,902,433 - RR42_RS09045 0.63 -0.0
1,902,439 + RR42_RS09045 0.64 +0.6
1,902,440 - RR42_RS09045 0.64 +0.2
1,902,440 - RR42_RS09045 0.64 -0.8
1,902,440 - RR42_RS09045 0.64 +0.4
1,902,724 + RR42_RS09045 0.78 -0.5
1,902,724 + RR42_RS09045 0.78 -0.1
1,902,725 - RR42_RS09045 0.78 +0.1
1,902,725 - RR42_RS09045 0.78 +0.3
1,902,726 + RR42_RS09045 0.78 +1.5
1,902,727 - RR42_RS09045 0.78 +1.6
1,902,727 - RR42_RS09045 0.78 +1.6
1,902,910 + RR42_RS09045 0.88 +0.0
1,902,910 + RR42_RS09045 0.88 -1.1
1,902,910 + RR42_RS09045 0.88 +0.1
1,902,910 + RR42_RS09045 0.88 +0.2
1,902,910 + RR42_RS09045 0.88 +0.7
1,902,911 - RR42_RS09045 0.88 -0.2
1,902,940 + RR42_RS09045 0.89 +0.8
1,902,949 + RR42_RS09045 0.90 +0.2
1,902,950 - RR42_RS09045 0.90 -0.3
1,903,058 - -1.2
1,903,058 - -0.2
1,903,058 - -0.8
1,903,058 - +0.5
1,903,058 - -0.1
1,903,058 - +0.6
1,903,223 + -1.4
1,903,223 + -2.0
1,903,224 - +0.0
1,903,224 - +0.5
1,903,231 - +0.8
1,903,416 - RR42_RS09050 0.28 -1.2
1,903,452 - RR42_RS09050 0.33 -0.5
1,903,683 + RR42_RS09050 0.66 -1.4
1,903,683 + RR42_RS09050 0.66 +0.5
1,903,684 - RR42_RS09050 0.66 -0.8
1,903,684 - RR42_RS09050 0.66 -1.4
1,904,325 - RR42_RS09055 0.60 +1.6
1,904,603 + -0.2
1,904,704 + -0.1
1,904,705 - +0.2
1,904,811 + RR42_RS09060 0.12 -0.1

Or see this region's nucleotide sequence