Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02980 and RR42_RS02985 are separated by 119 nucleotides RR42_RS02985 and RR42_RS02990 overlap by 8 nucleotides RR42_RS02990 and RR42_RS02995 are separated by 828 nucleotides
RR42_RS02980: RR42_RS02980 - hypothetical protein, at 661,410 to 661,859
_RS02980
RR42_RS02985: RR42_RS02985 - hypothetical protein, at 661,979 to 662,566
_RS02985
RR42_RS02990: RR42_RS02990 - hypothetical protein, at 662,559 to 662,762
_RS02990
RR42_RS02995: RR42_RS02995 - LysR family transcriptional regulator, at 663,591 to 664,505
_RS02995
Position (kb) 662
663 Strain fitness (log2 ratio) -2
-1
0
1
2 at 661.576 kb on - strand, within RR42_RS02980 at 661.624 kb on - strand, within RR42_RS02980 at 661.624 kb on - strand, within RR42_RS02980 at 661.679 kb on - strand, within RR42_RS02980 at 661.708 kb on + strand, within RR42_RS02980 at 661.708 kb on + strand, within RR42_RS02980 at 661.709 kb on - strand, within RR42_RS02980 at 661.709 kb on - strand, within RR42_RS02980 at 661.709 kb on - strand, within RR42_RS02980 at 661.950 kb on - strand at 661.953 kb on + strand at 661.954 kb on - strand at 662.028 kb on + strand at 662.029 kb on - strand at 662.128 kb on + strand, within RR42_RS02985 at 662.129 kb on - strand, within RR42_RS02985 at 662.169 kb on + strand, within RR42_RS02985 at 662.387 kb on + strand, within RR42_RS02985 at 662.394 kb on - strand, within RR42_RS02985 at 662.423 kb on + strand, within RR42_RS02985 at 662.423 kb on + strand, within RR42_RS02985 at 662.424 kb on - strand, within RR42_RS02985 at 662.492 kb on - strand, within RR42_RS02985 at 662.502 kb on - strand, within RR42_RS02985 at 662.560 kb on + strand at 662.568 kb on + strand at 662.568 kb on + strand at 662.568 kb on + strand at 662.569 kb on - strand at 662.569 kb on - strand at 662.569 kb on - strand at 662.617 kb on + strand, within RR42_RS02990 at 662.617 kb on + strand, within RR42_RS02990 at 662.617 kb on + strand, within RR42_RS02990 at 662.618 kb on - strand, within RR42_RS02990 at 662.621 kb on + strand, within RR42_RS02990 at 662.622 kb on - strand, within RR42_RS02990 at 662.684 kb on + strand, within RR42_RS02990 at 662.710 kb on + strand, within RR42_RS02990 at 662.916 kb on + strand at 662.917 kb on - strand at 663.045 kb on + strand at 663.066 kb on + strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.130 kb on + strand at 663.130 kb on + strand at 663.131 kb on - strand at 663.223 kb on + strand at 663.223 kb on + strand at 663.224 kb on - strand at 663.224 kb on - strand at 663.255 kb on + strand at 663.263 kb on + strand at 663.358 kb on - strand at 663.358 kb on - strand at 663.430 kb on + strand at 663.431 kb on - strand at 663.431 kb on - strand at 663.437 kb on + strand at 663.593 kb on - strand at 663.701 kb on - strand, within RR42_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 661,576 - RR42_RS02980 0.37 +0.0 661,624 - RR42_RS02980 0.48 +0.3 661,624 - RR42_RS02980 0.48 -1.2 661,679 - RR42_RS02980 0.60 -2.3 661,708 + RR42_RS02980 0.66 +0.0 661,708 + RR42_RS02980 0.66 -0.3 661,709 - RR42_RS02980 0.66 -0.4 661,709 - RR42_RS02980 0.66 +0.1 661,709 - RR42_RS02980 0.66 +0.8 661,950 - -0.2 661,953 + +0.3 661,954 - -1.2 662,028 + +0.3 662,029 - -0.9 662,128 + RR42_RS02985 0.25 +0.2 662,129 - RR42_RS02985 0.26 +0.6 662,169 + RR42_RS02985 0.32 -0.3 662,387 + RR42_RS02985 0.69 +0.0 662,394 - RR42_RS02985 0.71 -0.4 662,423 + RR42_RS02985 0.76 -0.6 662,423 + RR42_RS02985 0.76 +0.3 662,424 - RR42_RS02985 0.76 +0.1 662,492 - RR42_RS02985 0.87 +0.3 662,502 - RR42_RS02985 0.89 -0.3 662,560 + -1.1 662,568 + +0.1 662,568 + -0.3 662,568 + -0.1 662,569 - +0.1 662,569 - +0.7 662,569 - +0.6 662,617 + RR42_RS02990 0.28 -0.4 662,617 + RR42_RS02990 0.28 +0.2 662,617 + RR42_RS02990 0.28 -0.8 662,618 - RR42_RS02990 0.29 -1.5 662,621 + RR42_RS02990 0.30 -0.0 662,622 - RR42_RS02990 0.31 -0.3 662,684 + RR42_RS02990 0.61 -0.8 662,710 + RR42_RS02990 0.74 -0.1 662,916 + -0.5 662,917 - -0.1 663,045 + -0.8 663,066 + +2.1 663,067 - +0.6 663,067 - -0.2 663,067 - -0.4 663,067 - +0.9 663,067 - +0.1 663,067 - +0.2 663,130 + -0.6 663,130 + -0.0 663,131 - -0.1 663,223 + -0.1 663,223 + -1.0 663,224 - -0.1 663,224 - +0.4 663,255 + -0.3 663,263 + +0.1 663,358 - +0.1 663,358 - +0.1 663,430 + +0.0 663,431 - +0.2 663,431 - +1.3 663,437 + +0.6 663,593 - +0.7 663,701 - RR42_RS02995 0.12 -0.0
Or see this region's nucleotide sequence