Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02735 and RR42_RS02740 overlap by 20 nucleotides RR42_RS02740 and RR42_RS02745 overlap by 4 nucleotides RR42_RS02745 and RR42_RS02750 are separated by 81 nucleotides RR42_RS02750 and RR42_RS02755 are separated by 17 nucleotides
RR42_RS02735: RR42_RS02735 - hypothetical protein, at 609,230 to 610,477
_RS02735
RR42_RS02740: RR42_RS02740 - hypothetical protein, at 610,458 to 610,967
_RS02740
RR42_RS02745: RR42_RS02745 - Xaa-Pro aminopeptidase, at 610,964 to 612,346
_RS02745
RR42_RS02750: RR42_RS02750 - mannose-1-phosphate guanylyltransferase, at 612,428 to 613,168
_RS02750
RR42_RS02755: RR42_RS02755 - branched-chain amino acid transporter, at 613,186 to 613,524
_RS02755
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.868 kb on - strand, within RR42_RS02740 at 610.944 kb on + strand at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.275 kb on - strand, within RR42_RS02745 at 611.318 kb on - strand, within RR42_RS02745 at 611.401 kb on - strand, within RR42_RS02745 at 611.401 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.704 kb on - strand, within RR42_RS02745 at 612.052 kb on - strand, within RR42_RS02745 at 612.181 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.382 kb on + strand at 612.570 kb on + strand, within RR42_RS02750 at 612.571 kb on - strand, within RR42_RS02750 at 612.573 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.631 kb on - strand, within RR42_RS02750 at 612.640 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.942 kb on + strand, within RR42_RS02750 at 612.942 kb on + strand, within RR42_RS02750 at 613.187 kb on + strand at 613.188 kb on - strand at 613.188 kb on - strand at 613.188 kb on - strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 610,868 - RR42_RS02740 0.80 -0.5 610,944 + +0.6 611,131 - RR42_RS02745 0.12 +2.4 611,131 - RR42_RS02745 0.12 +0.9 611,131 - RR42_RS02745 0.12 +0.6 611,131 - RR42_RS02745 0.12 +1.0 611,131 - RR42_RS02745 0.12 +0.3 611,275 - RR42_RS02745 0.22 -1.2 611,318 - RR42_RS02745 0.26 +0.1 611,401 - RR42_RS02745 0.32 +0.1 611,401 - RR42_RS02745 0.32 +1.5 611,461 - RR42_RS02745 0.36 +0.1 611,461 - RR42_RS02745 0.36 +0.9 611,461 - RR42_RS02745 0.36 -0.6 611,461 - RR42_RS02745 0.36 +0.7 611,644 - RR42_RS02745 0.49 +1.0 611,644 - RR42_RS02745 0.49 +0.1 611,644 - RR42_RS02745 0.49 +0.1 611,644 - RR42_RS02745 0.49 +0.1 611,704 - RR42_RS02745 0.54 +0.9 612,052 - RR42_RS02745 0.79 +0.4 612,181 - RR42_RS02745 0.88 +0.3 612,187 - RR42_RS02745 0.88 +1.5 612,187 - RR42_RS02745 0.88 +0.2 612,187 - RR42_RS02745 0.88 +0.3 612,187 - RR42_RS02745 0.88 -0.4 612,187 - RR42_RS02745 0.88 -1.4 612,187 - RR42_RS02745 0.88 -0.1 612,382 + +0.5 612,570 + RR42_RS02750 0.19 -0.4 612,571 - RR42_RS02750 0.19 +0.3 612,573 + RR42_RS02750 0.20 -0.3 612,630 + RR42_RS02750 0.27 -1.1 612,630 + RR42_RS02750 0.27 -1.1 612,630 + RR42_RS02750 0.27 +0.5 612,630 + RR42_RS02750 0.27 +0.5 612,631 - RR42_RS02750 0.27 -0.8 612,640 + RR42_RS02750 0.29 -0.6 612,819 + RR42_RS02750 0.53 -0.3 612,819 + RR42_RS02750 0.53 -1.3 612,819 + RR42_RS02750 0.53 -0.1 612,942 + RR42_RS02750 0.69 -0.9 612,942 + RR42_RS02750 0.69 -0.1 613,187 + -0.1 613,188 - -0.7 613,188 - +1.2 613,188 - -0.9 613,211 + -2.3 613,211 + +0.7 613,211 + +0.8 613,211 + -0.1 613,212 - -0.7
Or see this region's nucleotide sequence