Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20335

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20325 and RALBFv3_RS20330 overlap by 1 nucleotidesRALBFv3_RS20330 and RALBFv3_RS20335 are separated by 45 nucleotidesRALBFv3_RS20335 and RALBFv3_RS20340 are separated by 649 nucleotides RALBFv3_RS20325: RALBFv3_RS20325 - hypothetical protein, at 1,253,697 to 1,254,368 _RS20325 RALBFv3_RS20330: RALBFv3_RS20330 - DUF4810 domain-containing protein, at 1,254,368 to 1,254,733 _RS20330 RALBFv3_RS20335: RALBFv3_RS20335 - curli production assembly protein CsgG, at 1,254,779 to 1,255,462 _RS20335 RALBFv3_RS20340: RALBFv3_RS20340 - type III effector gala6 protein, at 1,256,112 to 1,259,273 _RS20340 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -2 -1 0 1 2at 1253.998 kb on + strand, within RALBFv3_RS20325at 1253.999 kb on - strand, within RALBFv3_RS20325at 1254.029 kb on - strand, within RALBFv3_RS20325at 1254.151 kb on + strand, within RALBFv3_RS20325at 1254.151 kb on + strand, within RALBFv3_RS20325at 1254.151 kb on + strand, within RALBFv3_RS20325at 1254.152 kb on - strand, within RALBFv3_RS20325at 1254.152 kb on - strand, within RALBFv3_RS20325at 1254.152 kb on - strand, within RALBFv3_RS20325at 1254.155 kb on - strand, within RALBFv3_RS20325at 1254.200 kb on - strand, within RALBFv3_RS20325at 1254.200 kb on - strand, within RALBFv3_RS20325at 1254.280 kb on + strand, within RALBFv3_RS20325at 1254.281 kb on - strand, within RALBFv3_RS20325at 1254.411 kb on + strand, within RALBFv3_RS20330at 1254.612 kb on + strand, within RALBFv3_RS20330at 1254.613 kb on - strand, within RALBFv3_RS20330at 1254.627 kb on + strand, within RALBFv3_RS20330at 1254.627 kb on + strand, within RALBFv3_RS20330at 1254.628 kb on - strand, within RALBFv3_RS20330at 1254.743 kb on + strandat 1254.780 kb on + strandat 1254.780 kb on + strandat 1254.885 kb on + strand, within RALBFv3_RS20335at 1254.886 kb on - strand, within RALBFv3_RS20335at 1254.933 kb on + strand, within RALBFv3_RS20335at 1254.934 kb on - strand, within RALBFv3_RS20335at 1254.957 kb on + strand, within RALBFv3_RS20335at 1254.958 kb on + strand, within RALBFv3_RS20335at 1255.104 kb on + strand, within RALBFv3_RS20335at 1255.104 kb on + strand, within RALBFv3_RS20335at 1255.104 kb on + strand, within RALBFv3_RS20335at 1255.105 kb on - strand, within RALBFv3_RS20335at 1255.281 kb on + strand, within RALBFv3_RS20335at 1255.734 kb on + strandat 1255.735 kb on - strandat 1255.787 kb on - strandat 1255.968 kb on + strandat 1255.968 kb on + strandat 1255.969 kb on - strandat 1255.969 kb on - strandat 1256.088 kb on - strandat 1256.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,253,998 + RALBFv3_RS20325 0.45 -0.1
1,253,999 - RALBFv3_RS20325 0.45 -0.5
1,254,029 - RALBFv3_RS20325 0.49 -0.1
1,254,151 + RALBFv3_RS20325 0.68 +1.0
1,254,151 + RALBFv3_RS20325 0.68 -0.6
1,254,151 + RALBFv3_RS20325 0.68 -0.7
1,254,152 - RALBFv3_RS20325 0.68 -0.0
1,254,152 - RALBFv3_RS20325 0.68 +0.2
1,254,152 - RALBFv3_RS20325 0.68 -1.6
1,254,155 - RALBFv3_RS20325 0.68 -0.2
1,254,200 - RALBFv3_RS20325 0.75 +1.0
1,254,200 - RALBFv3_RS20325 0.75 +1.1
1,254,280 + RALBFv3_RS20325 0.87 -1.1
1,254,281 - RALBFv3_RS20325 0.87 -1.1
1,254,411 + RALBFv3_RS20330 0.12 +2.2
1,254,612 + RALBFv3_RS20330 0.67 +1.2
1,254,613 - RALBFv3_RS20330 0.67 +1.2
1,254,627 + RALBFv3_RS20330 0.71 +0.2
1,254,627 + RALBFv3_RS20330 0.71 +0.3
1,254,628 - RALBFv3_RS20330 0.71 +0.5
1,254,743 + +0.3
1,254,780 + -1.7
1,254,780 + +1.2
1,254,885 + RALBFv3_RS20335 0.15 +0.8
1,254,886 - RALBFv3_RS20335 0.16 -0.0
1,254,933 + RALBFv3_RS20335 0.23 +0.4
1,254,934 - RALBFv3_RS20335 0.23 -1.1
1,254,957 + RALBFv3_RS20335 0.26 -0.1
1,254,958 + RALBFv3_RS20335 0.26 +0.4
1,255,104 + RALBFv3_RS20335 0.48 +1.0
1,255,104 + RALBFv3_RS20335 0.48 +1.5
1,255,104 + RALBFv3_RS20335 0.48 +1.0
1,255,105 - RALBFv3_RS20335 0.48 +2.5
1,255,281 + RALBFv3_RS20335 0.73 -0.8
1,255,734 + +0.2
1,255,735 - +0.1
1,255,787 - -0.6
1,255,968 + -1.2
1,255,968 + +0.0
1,255,969 - -0.7
1,255,969 - -1.2
1,256,088 - +0.7
1,256,424 + -2.0

Or see this region's nucleotide sequence