Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18980 and RALBFv3_RS18985 are separated by 159 nucleotides RALBFv3_RS18985 and RALBFv3_RS18990 are separated by 15 nucleotides RALBFv3_RS18990 and RALBFv3_RS18995 overlap by 4 nucleotides
RALBFv3_RS18980: RALBFv3_RS18980 - hypothetical protein, at 809,930 to 811,030
_RS18980
RALBFv3_RS18985: RALBFv3_RS18985 - salicylate synthase, at 811,190 to 814,213
_RS18985
RALBFv3_RS18990: RALBFv3_RS18990 - thioesterase, at 814,229 to 814,996
_RS18990
RALBFv3_RS18995: RALBFv3_RS18995 - thiazolinyl imide reductase, at 814,993 to 816,120
_RS18995
Position (kb) 811
812
813
814
815 Strain fitness (log2 ratio) -1
0
1 at 810.698 kb on + strand, within RALBFv3_RS18980 at 810.912 kb on - strand, within RALBFv3_RS18980 at 810.912 kb on - strand, within RALBFv3_RS18980 at 810.912 kb on - strand, within RALBFv3_RS18980 at 810.977 kb on + strand at 811.004 kb on - strand at 811.008 kb on - strand at 811.047 kb on + strand at 811.607 kb on - strand, within RALBFv3_RS18985 at 811.885 kb on - strand, within RALBFv3_RS18985 at 811.885 kb on - strand, within RALBFv3_RS18985 at 811.947 kb on + strand, within RALBFv3_RS18985 at 811.947 kb on + strand, within RALBFv3_RS18985 at 811.948 kb on - strand, within RALBFv3_RS18985 at 811.995 kb on + strand, within RALBFv3_RS18985 at 812.212 kb on - strand, within RALBFv3_RS18985 at 812.247 kb on + strand, within RALBFv3_RS18985 at 812.347 kb on + strand, within RALBFv3_RS18985 at 812.506 kb on - strand, within RALBFv3_RS18985 at 812.537 kb on - strand, within RALBFv3_RS18985 at 812.997 kb on + strand, within RALBFv3_RS18985 at 813.291 kb on + strand, within RALBFv3_RS18985 at 813.506 kb on - strand, within RALBFv3_RS18985 at 813.552 kb on + strand, within RALBFv3_RS18985 at 814.220 kb on - strand at 814.220 kb on - strand at 814.220 kb on - strand at 814.220 kb on - strand at 814.220 kb on - strand at 814.226 kb on - strand at 814.302 kb on + strand at 814.302 kb on + strand at 814.453 kb on + strand, within RALBFv3_RS18990 at 814.842 kb on + strand, within RALBFv3_RS18990
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 810,698 + RALBFv3_RS18980 0.70 +0.0 810,912 - RALBFv3_RS18980 0.89 -0.4 810,912 - RALBFv3_RS18980 0.89 -0.1 810,912 - RALBFv3_RS18980 0.89 -0.9 810,977 + -0.0 811,004 - -0.2 811,008 - -0.6 811,047 + -0.7 811,607 - RALBFv3_RS18985 0.14 -0.6 811,885 - RALBFv3_RS18985 0.23 +0.6 811,885 - RALBFv3_RS18985 0.23 +0.1 811,947 + RALBFv3_RS18985 0.25 +0.4 811,947 + RALBFv3_RS18985 0.25 -0.7 811,948 - RALBFv3_RS18985 0.25 -0.4 811,995 + RALBFv3_RS18985 0.27 -0.5 812,212 - RALBFv3_RS18985 0.34 +0.1 812,247 + RALBFv3_RS18985 0.35 -1.1 812,347 + RALBFv3_RS18985 0.38 -0.7 812,506 - RALBFv3_RS18985 0.44 -0.3 812,537 - RALBFv3_RS18985 0.45 +0.9 812,997 + RALBFv3_RS18985 0.60 +1.2 813,291 + RALBFv3_RS18985 0.69 +1.4 813,506 - RALBFv3_RS18985 0.77 +1.3 813,552 + RALBFv3_RS18985 0.78 -0.3 814,220 - +1.6 814,220 - -0.1 814,220 - -0.3 814,220 - -0.4 814,220 - -1.0 814,226 - -0.8 814,302 + -0.5 814,302 + +0.2 814,453 + RALBFv3_RS18990 0.29 +0.1 814,842 + RALBFv3_RS18990 0.80 +0.0
Or see this region's nucleotide sequence