Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00635 and RALBFv3_RS00640 are separated by 221 nucleotides RALBFv3_RS00640 and RALBFv3_RS00645 are separated by 162 nucleotides RALBFv3_RS00645 and RALBFv3_RS00650 are separated by 75 nucleotides RALBFv3_RS00650 and RALBFv3_RS00655 are separated by 31 nucleotides
RALBFv3_RS00635: RALBFv3_RS00635 - ABC-F family ATPase, at 140,143 to 141,765
_RS00635
RALBFv3_RS00640: RALBFv3_RS00640 - hypothetical protein, at 141,987 to 142,529
_RS00640
RALBFv3_RS00645: RALBFv3_RS00645 - aldehyde dehydrogenase family protein, at 142,692 to 144,128
_RS00645
RALBFv3_RS00650: RALBFv3_RS00650 - DUF1289 domain-containing protein, at 144,204 to 144,479
_RS00650
RALBFv3_RS00655: RALBFv3_RS00655 - glycoside hydrolase family 15 protein, at 144,511 to 146,370
_RS00655
Position (kb) 142
143
144
145 Strain fitness (log2 ratio) -1
0
1
2 at 141.727 kb on + strand at 141.727 kb on + strand at 142.337 kb on - strand, within RALBFv3_RS00640 at 142.514 kb on - strand at 142.586 kb on + strand at 142.979 kb on + strand, within RALBFv3_RS00645 at 143.016 kb on + strand, within RALBFv3_RS00645 at 143.608 kb on - strand, within RALBFv3_RS00645 at 143.688 kb on + strand, within RALBFv3_RS00645 at 143.904 kb on + strand, within RALBFv3_RS00645 at 144.067 kb on - strand at 144.090 kb on + strand at 144.487 kb on - strand at 144.635 kb on + strand at 144.817 kb on + strand, within RALBFv3_RS00655 at 144.941 kb on + strand, within RALBFv3_RS00655 at 144.974 kb on + strand, within RALBFv3_RS00655
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 141,727 + +0.9 141,727 + +0.8 142,337 - RALBFv3_RS00640 0.64 -1.7 142,514 - +0.1 142,586 + -0.3 142,979 + RALBFv3_RS00645 0.20 +1.2 143,016 + RALBFv3_RS00645 0.23 +0.3 143,608 - RALBFv3_RS00645 0.64 +0.6 143,688 + RALBFv3_RS00645 0.69 +1.1 143,904 + RALBFv3_RS00645 0.84 -0.0 144,067 - -0.3 144,090 + +0.8 144,487 - +1.6 144,635 + +1.8 144,817 + RALBFv3_RS00655 0.16 -0.2 144,941 + RALBFv3_RS00655 0.23 +0.0 144,974 + RALBFv3_RS00655 0.25 -0.7
Or see this region's nucleotide sequence