Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00015 and RALBFv3_RS00020 are separated by 5 nucleotides RALBFv3_RS00020 and RALBFv3_RS00025 are separated by 164 nucleotides RALBFv3_RS00025 and RALBFv3_RS00030 are separated by 161 nucleotides
RALBFv3_RS00015: RALBFv3_RS00015 - molybdenum cofactor biosynthesis protein MoaE, at 1,233 to 1,748
_RS00015
RALBFv3_RS00020: RALBFv3_RS00020 - fluoride efflux transporter CrcB, at 1,754 to 2,134
_RS00020
RALBFv3_RS00025: RALBFv3_RS00025 - cytochrome c1, at 2,299 to 4,473
_RS00025
RALBFv3_RS00030: RALBFv3_RS00030 - ATP-dependent chaperone ClpB, at 4,635 to 7,223
_RS00030
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1.893 kb on - strand, within RALBFv3_RS00020 at 2.204 kb on + strand at 2.204 kb on + strand at 2.227 kb on + strand at 2.238 kb on - strand at 2.612 kb on - strand, within RALBFv3_RS00025 at 2.612 kb on - strand, within RALBFv3_RS00025 at 2.668 kb on + strand, within RALBFv3_RS00025 at 2.669 kb on - strand, within RALBFv3_RS00025 at 2.734 kb on + strand, within RALBFv3_RS00025 at 2.735 kb on - strand, within RALBFv3_RS00025 at 2.860 kb on + strand, within RALBFv3_RS00025 at 2.914 kb on + strand, within RALBFv3_RS00025 at 2.915 kb on - strand, within RALBFv3_RS00025 at 3.300 kb on + strand, within RALBFv3_RS00025 at 3.433 kb on + strand, within RALBFv3_RS00025 at 3.433 kb on + strand, within RALBFv3_RS00025 at 3.433 kb on + strand, within RALBFv3_RS00025 at 3.631 kb on + strand, within RALBFv3_RS00025 at 3.632 kb on - strand, within RALBFv3_RS00025 at 3.676 kb on + strand, within RALBFv3_RS00025 at 3.677 kb on - strand, within RALBFv3_RS00025 at 4.165 kb on + strand, within RALBFv3_RS00025 at 4.165 kb on + strand, within RALBFv3_RS00025 at 4.166 kb on - strand, within RALBFv3_RS00025 at 4.166 kb on - strand, within RALBFv3_RS00025 at 4.167 kb on + strand, within RALBFv3_RS00025 at 4.252 kb on + strand, within RALBFv3_RS00025 at 4.253 kb on - strand, within RALBFv3_RS00025 at 4.279 kb on + strand at 4.280 kb on - strand at 4.280 kb on - strand at 4.347 kb on + strand at 4.422 kb on + strand at 4.716 kb on + strand at 4.716 kb on + strand at 4.716 kb on + strand at 4.717 kb on - strand at 5.383 kb on - strand, within RALBFv3_RS00030
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,893 - RALBFv3_RS00020 0.36 +0.5 2,204 + +1.0 2,204 + -0.1 2,227 + +0.6 2,238 - +2.4 2,612 - RALBFv3_RS00025 0.14 +0.6 2,612 - RALBFv3_RS00025 0.14 -0.7 2,668 + RALBFv3_RS00025 0.17 -0.2 2,669 - RALBFv3_RS00025 0.17 +1.0 2,734 + RALBFv3_RS00025 0.20 -0.4 2,735 - RALBFv3_RS00025 0.20 -0.6 2,860 + RALBFv3_RS00025 0.26 +0.0 2,914 + RALBFv3_RS00025 0.28 -1.0 2,915 - RALBFv3_RS00025 0.28 -0.6 3,300 + RALBFv3_RS00025 0.46 -0.4 3,433 + RALBFv3_RS00025 0.52 -1.1 3,433 + RALBFv3_RS00025 0.52 +0.7 3,433 + RALBFv3_RS00025 0.52 -0.4 3,631 + RALBFv3_RS00025 0.61 -0.6 3,632 - RALBFv3_RS00025 0.61 +0.9 3,676 + RALBFv3_RS00025 0.63 -0.9 3,677 - RALBFv3_RS00025 0.63 -0.4 4,165 + RALBFv3_RS00025 0.86 -0.5 4,165 + RALBFv3_RS00025 0.86 -0.1 4,166 - RALBFv3_RS00025 0.86 -0.0 4,166 - RALBFv3_RS00025 0.86 -0.4 4,167 + RALBFv3_RS00025 0.86 -1.1 4,252 + RALBFv3_RS00025 0.90 -0.8 4,253 - RALBFv3_RS00025 0.90 -0.0 4,279 + -0.7 4,280 - +0.4 4,280 - -0.5 4,347 + -1.8 4,422 + +2.1 4,716 + -1.0 4,716 + +0.0 4,716 + -1.9 4,717 - +0.7 5,383 - RALBFv3_RS00030 0.29 +0.9
Or see this region's nucleotide sequence