Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_822

Experiment: Paraquat dichloride 0.016 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_821 and Pf1N1B4_822 are separated by 759 nucleotidesPf1N1B4_822 and Pf1N1B4_823 are separated by 201 nucleotidesPf1N1B4_823 and Pf1N1B4_824 are separated by 2 nucleotides Pf1N1B4_821 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 939,692 to 942,100 _821 Pf1N1B4_822 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 942,860 to 945,277 _822 Pf1N1B4_823 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 945,479 to 945,871 _823 Pf1N1B4_824 - POSSIBLE MEMBRANE PROTEIN, at 945,874 to 946,518 _824 Position (kb) 942 943 944 945 946Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 941.909 kb on + strandat 941.921 kb on + strandat 941.993 kb on + strandat 941.993 kb on + strandat 941.994 kb on - strandat 941.994 kb on - strandat 941.994 kb on - strandat 941.994 kb on - strandat 942.017 kb on + strandat 942.017 kb on + strandat 942.017 kb on + strandat 942.017 kb on + strandat 942.017 kb on + strandat 942.018 kb on - strandat 942.018 kb on - strandat 942.018 kb on - strandat 942.018 kb on - strandat 942.018 kb on - strandat 942.018 kb on - strandat 942.018 kb on - strandat 942.071 kb on + strandat 942.071 kb on + strandat 942.071 kb on + strandat 942.071 kb on + strandat 942.071 kb on + strandat 942.072 kb on - strandat 942.072 kb on - strandat 942.072 kb on - strandat 942.072 kb on - strandat 942.072 kb on - strandat 942.083 kb on + strandat 942.084 kb on - strandat 942.084 kb on - strandat 942.084 kb on - strandat 942.191 kb on + strandat 942.224 kb on + strandat 942.234 kb on + strandat 942.234 kb on + strandat 942.234 kb on + strandat 942.362 kb on + strandat 942.363 kb on - strandat 942.363 kb on - strandat 942.704 kb on + strandat 942.704 kb on + strandat 942.708 kb on + strandat 942.708 kb on + strandat 942.708 kb on + strandat 943.991 kb on + strand, within Pf1N1B4_822at 943.991 kb on + strand, within Pf1N1B4_822at 944.097 kb on - strand, within Pf1N1B4_822at 944.258 kb on + strand, within Pf1N1B4_822at 945.439 kb on + strandat 945.439 kb on + strandat 945.439 kb on + strandat 945.439 kb on + strandat 945.440 kb on - strandat 945.440 kb on - strandat 945.440 kb on - strandat 945.477 kb on + strandat 945.477 kb on + strandat 945.477 kb on + strandat 945.478 kb on - strandat 945.500 kb on - strandat 945.704 kb on + strand, within Pf1N1B4_823at 945.803 kb on + strand, within Pf1N1B4_823at 945.803 kb on + strand, within Pf1N1B4_823at 945.803 kb on + strand, within Pf1N1B4_823at 945.804 kb on - strand, within Pf1N1B4_823at 946.135 kb on + strand, within Pf1N1B4_824at 946.135 kb on + strand, within Pf1N1B4_824

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.016 mg/mL
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941,909 + -0.9
941,921 + -0.9
941,993 + -0.7
941,993 + +0.2
941,994 - -2.8
941,994 - +0.1
941,994 - -1.1
941,994 - +0.4
942,017 + +1.2
942,017 + -1.5
942,017 + +1.1
942,017 + -0.7
942,017 + -1.5
942,018 - -0.1
942,018 - +0.8
942,018 - -0.9
942,018 - +2.1
942,018 - -0.5
942,018 - +3.2
942,018 - +2.2
942,071 + -1.1
942,071 + -1.0
942,071 + +0.9
942,071 + -1.3
942,071 + -0.2
942,072 - -0.7
942,072 - -0.2
942,072 - +0.7
942,072 - -0.9
942,072 - -0.9
942,083 + -0.3
942,084 - -1.8
942,084 - -1.1
942,084 - -1.0
942,191 + -1.5
942,224 + +0.9
942,234 + +0.3
942,234 + +1.1
942,234 + +0.2
942,362 + -1.7
942,363 - +0.9
942,363 - -1.5
942,704 + +0.3
942,704 + -0.5
942,708 + +1.7
942,708 + +0.4
942,708 + +3.5
943,991 + Pf1N1B4_822 0.47 +0.9
943,991 + Pf1N1B4_822 0.47 -0.7
944,097 - Pf1N1B4_822 0.51 -0.8
944,258 + Pf1N1B4_822 0.58 +2.0
945,439 + -0.0
945,439 + -0.6
945,439 + -2.0
945,439 + -1.7
945,440 - -0.7
945,440 - -0.6
945,440 - -2.7
945,477 + -0.1
945,477 + +0.7
945,477 + -1.9
945,478 - +0.3
945,500 - +0.5
945,704 + Pf1N1B4_823 0.57 -0.3
945,803 + Pf1N1B4_823 0.82 -1.0
945,803 + Pf1N1B4_823 0.82 +2.0
945,803 + Pf1N1B4_823 0.82 +0.7
945,804 - Pf1N1B4_823 0.83 +1.2
946,135 + Pf1N1B4_824 0.40 +0.7
946,135 + Pf1N1B4_824 0.40 -0.2

Or see this region's nucleotide sequence