Experiment: Paraquat dichloride 0.016 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5606 and Pf1N1B4_5607 are separated by 557 nucleotides Pf1N1B4_5607 and Pf1N1B4_5608 are separated by 565 nucleotides
Pf1N1B4_5606 - Alpha-ketoglutarate permease, at 30,868 to 32,253
_5606
Pf1N1B4_5607 - C4-dicarboxylate transport protein, at 32,811 to 34,115
_5607
Pf1N1B4_5608 - Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79), at 34,681 to 35,220
_5608
Position (kb)
32
33
34
35 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 31.942 kb on + strand, within Pf1N1B4_5606 at 32.006 kb on + strand, within Pf1N1B4_5606 at 32.006 kb on + strand, within Pf1N1B4_5606 at 32.007 kb on - strand, within Pf1N1B4_5606 at 32.056 kb on + strand, within Pf1N1B4_5606 at 32.057 kb on - strand, within Pf1N1B4_5606 at 32.107 kb on + strand, within Pf1N1B4_5606 at 32.107 kb on + strand at 32.108 kb on - strand, within Pf1N1B4_5606 at 32.108 kb on - strand at 32.176 kb on + strand at 32.177 kb on - strand at 32.259 kb on - strand at 32.345 kb on - strand at 32.529 kb on - strand at 32.729 kb on + strand at 32.730 kb on - strand at 33.123 kb on - strand, within Pf1N1B4_5607 at 33.182 kb on - strand, within Pf1N1B4_5607 at 33.182 kb on - strand, within Pf1N1B4_5607 at 33.212 kb on - strand, within Pf1N1B4_5607 at 33.464 kb on - strand, within Pf1N1B4_5607 at 33.967 kb on - strand, within Pf1N1B4_5607 at 33.967 kb on - strand at 33.995 kb on - strand at 34.328 kb on + strand at 34.328 kb on + strand at 34.328 kb on + strand at 34.328 kb on + strand at 34.329 kb on - strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.332 kb on + strand at 34.333 kb on - strand at 34.333 kb on - strand at 34.352 kb on + strand at 34.354 kb on + strand at 34.354 kb on + strand at 34.355 kb on - strand at 34.403 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.016 mg/mL remove 31,942 + Pf1N1B4_5606 0.77 -1.2 32,006 + Pf1N1B4_5606 0.82 -0.8 32,006 + Pf1N1B4_5606 0.82 +0.6 32,007 - Pf1N1B4_5606 0.82 -0.2 32,056 + Pf1N1B4_5606 0.86 +0.5 32,057 - Pf1N1B4_5606 0.86 +0.5 32,107 + Pf1N1B4_5606 0.89 +0.6 32,107 + +0.2 32,108 - Pf1N1B4_5606 0.89 -1.4 32,108 - +0.6 32,176 + +0.5 32,177 - +0.2 32,259 - +1.0 32,345 - +0.4 32,529 - -1.4 32,729 + -1.2 32,730 - +0.8 33,123 - Pf1N1B4_5607 0.24 -0.6 33,182 - Pf1N1B4_5607 0.28 -1.8 33,182 - Pf1N1B4_5607 0.28 -1.8 33,212 - Pf1N1B4_5607 0.31 +0.2 33,464 - Pf1N1B4_5607 0.50 -2.0 33,967 - Pf1N1B4_5607 0.89 -0.8 33,967 - +0.2 33,995 - -0.8 34,328 + +0.2 34,328 + -1.6 34,328 + +0.8 34,328 + -0.1 34,329 - -0.4 34,332 + -0.2 34,332 + +0.8 34,332 + -0.8 34,332 + +0.2 34,332 + -0.1 34,332 + -0.2 34,332 + -0.4 34,332 + -0.6 34,332 + +2.2 34,332 + -1.3 34,332 + -0.1 34,332 + -1.6 34,333 - -0.4 34,333 - +1.9 34,352 + -1.2 34,354 + -1.0 34,354 + -0.7 34,355 - +0.4 34,403 - +0.2
Or see this region's nucleotide sequence