Experiment: Paraquat dichloride 0.016 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4372 and Pf1N1B4_4373 are separated by 154 nucleotides Pf1N1B4_4373 and Pf1N1B4_4374 are separated by 434 nucleotides Pf1N1B4_4374 and Pf1N1B4_4375 are separated by 14 nucleotides
Pf1N1B4_4372 - Galactitol utilization operon repressor, at 4,829,817 to 4,830,605
_4372
Pf1N1B4_4373 - hypothetical protein, at 4,830,760 to 4,830,903
_4373
Pf1N1B4_4374 - hypothetical protein, at 4,831,338 to 4,831,736
_4374
Pf1N1B4_4375 - Chromate transport protein ChrA, at 4,831,751 to 4,833,109
_4375
Position (kb)
4831
4832 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4830.595 kb on + strand at 4830.595 kb on + strand at 4830.595 kb on + strand at 4830.681 kb on + strand at 4830.682 kb on - strand at 4830.737 kb on + strand at 4830.775 kb on + strand at 4830.775 kb on + strand, within Pf1N1B4_4373 at 4830.775 kb on + strand, within Pf1N1B4_4373 at 4830.901 kb on + strand at 4830.902 kb on - strand at 4831.020 kb on + strand at 4831.020 kb on + strand at 4831.070 kb on + strand at 4831.070 kb on + strand at 4831.071 kb on - strand at 4831.119 kb on + strand at 4831.269 kb on + strand at 4831.269 kb on + strand at 4831.269 kb on + strand at 4831.270 kb on - strand at 4831.569 kb on + strand, within Pf1N1B4_4374 at 4831.570 kb on - strand, within Pf1N1B4_4374 at 4831.679 kb on - strand, within Pf1N1B4_4374 at 4831.679 kb on - strand, within Pf1N1B4_4374 at 4831.691 kb on + strand, within Pf1N1B4_4374 at 4831.691 kb on + strand, within Pf1N1B4_4374 at 4831.691 kb on + strand, within Pf1N1B4_4374 at 4831.691 kb on + strand, within Pf1N1B4_4374 at 4831.691 kb on + strand, within Pf1N1B4_4374 at 4831.692 kb on - strand, within Pf1N1B4_4374 at 4831.730 kb on + strand at 4831.730 kb on + strand at 4831.730 kb on + strand at 4831.730 kb on + strand at 4831.731 kb on - strand at 4832.131 kb on - strand at 4832.262 kb on + strand, within Pf1N1B4_4375 at 4832.262 kb on + strand, within Pf1N1B4_4375 at 4832.263 kb on - strand, within Pf1N1B4_4375 at 4832.263 kb on - strand, within Pf1N1B4_4375 at 4832.263 kb on - strand, within Pf1N1B4_4375 at 4832.263 kb on - strand at 4832.312 kb on - strand, within Pf1N1B4_4375 at 4832.423 kb on - strand at 4832.550 kb on + strand, within Pf1N1B4_4375
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.016 mg/mL remove 4,830,595 + -0.7 4,830,595 + -0.1 4,830,595 + +0.7 4,830,681 + +0.2 4,830,682 - -0.4 4,830,737 + +1.2 4,830,775 + +0.2 4,830,775 + Pf1N1B4_4373 0.10 -1.1 4,830,775 + Pf1N1B4_4373 0.10 +1.2 4,830,901 + -1.5 4,830,902 - +1.8 4,831,020 + -1.4 4,831,020 + -0.0 4,831,070 + +0.6 4,831,070 + -0.4 4,831,071 - +0.2 4,831,119 + +1.8 4,831,269 + +1.2 4,831,269 + -0.4 4,831,269 + +0.2 4,831,270 - -0.1 4,831,569 + Pf1N1B4_4374 0.58 -0.7 4,831,570 - Pf1N1B4_4374 0.58 -0.8 4,831,679 - Pf1N1B4_4374 0.85 -0.4 4,831,679 - Pf1N1B4_4374 0.85 -1.2 4,831,691 + Pf1N1B4_4374 0.88 -0.0 4,831,691 + Pf1N1B4_4374 0.88 -3.2 4,831,691 + Pf1N1B4_4374 0.88 -2.1 4,831,691 + Pf1N1B4_4374 0.88 -0.0 4,831,691 + Pf1N1B4_4374 0.88 -0.7 4,831,692 - Pf1N1B4_4374 0.89 -1.5 4,831,730 + +0.2 4,831,730 + -0.1 4,831,730 + -0.4 4,831,730 + +0.9 4,831,731 - -0.3 4,832,131 - -1.1 4,832,262 + Pf1N1B4_4375 0.38 -1.4 4,832,262 + Pf1N1B4_4375 0.38 +0.7 4,832,263 - Pf1N1B4_4375 0.38 -2.0 4,832,263 - Pf1N1B4_4375 0.38 +0.9 4,832,263 - Pf1N1B4_4375 0.38 -0.1 4,832,263 - -0.1 4,832,312 - Pf1N1B4_4375 0.41 -0.0 4,832,423 - -0.8 4,832,550 + Pf1N1B4_4375 0.59 -0.5
Or see this region's nucleotide sequence