Experiment: Paraquat dichloride 0.016 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_362 and Pf1N1B4_363 overlap by 8 nucleotides Pf1N1B4_363 and Pf1N1B4_364 are separated by 3 nucleotides
Pf1N1B4_362 - Lipid A export ATP-binding/permease protein MsbA, at 430,596 to 432,413
_362
Pf1N1B4_363 - Thioredoxin, at 432,406 to 433,044
_363
Pf1N1B4_364 - Rhodanese domain protein UPF0176, at 433,048 to 433,989
_364
Position (kb) 432
433
434 Strain fitness (log2 ratio) -2
-1
0
1 at 431.426 kb on - strand, within Pf1N1B4_362 at 431.426 kb on - strand, within Pf1N1B4_362 at 431.624 kb on - strand, within Pf1N1B4_362 at 431.624 kb on - strand, within Pf1N1B4_362 at 431.803 kb on + strand, within Pf1N1B4_362 at 431.803 kb on + strand, within Pf1N1B4_362 at 431.803 kb on + strand, within Pf1N1B4_362 at 431.803 kb on + strand, within Pf1N1B4_362 at 431.804 kb on - strand, within Pf1N1B4_362 at 431.804 kb on - strand, within Pf1N1B4_362 at 432.154 kb on + strand at 432.471 kb on - strand, within Pf1N1B4_363 at 432.501 kb on + strand, within Pf1N1B4_363 at 432.502 kb on - strand, within Pf1N1B4_363 at 432.687 kb on - strand, within Pf1N1B4_363 at 432.687 kb on - strand, within Pf1N1B4_363 at 432.782 kb on + strand, within Pf1N1B4_363 at 432.865 kb on - strand, within Pf1N1B4_363 at 432.867 kb on - strand, within Pf1N1B4_363 at 432.867 kb on - strand, within Pf1N1B4_363 at 432.867 kb on - strand, within Pf1N1B4_363 at 432.937 kb on + strand, within Pf1N1B4_363 at 433.022 kb on + strand at 433.022 kb on + strand at 433.022 kb on + strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.073 kb on + strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.079 kb on + strand at 433.079 kb on + strand at 433.080 kb on - strand at 433.205 kb on + strand, within Pf1N1B4_364 at 433.205 kb on + strand, within Pf1N1B4_364 at 433.206 kb on - strand, within Pf1N1B4_364 at 433.206 kb on - strand, within Pf1N1B4_364 at 433.206 kb on - strand, within Pf1N1B4_364 at 433.392 kb on - strand, within Pf1N1B4_364 at 433.421 kb on + strand, within Pf1N1B4_364 at 433.509 kb on - strand, within Pf1N1B4_364 at 433.652 kb on + strand, within Pf1N1B4_364 at 433.653 kb on - strand, within Pf1N1B4_364 at 433.653 kb on - strand, within Pf1N1B4_364 at 433.934 kb on + strand at 433.956 kb on + strand at 433.956 kb on + strand at 433.958 kb on + strand at 433.958 kb on + strand at 433.959 kb on - strand at 433.994 kb on - strand at 433.994 kb on - strand at 434.017 kb on + strand at 434.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.016 mg/mL remove 431,426 - Pf1N1B4_362 0.46 -0.6 431,426 - Pf1N1B4_362 0.46 -0.6 431,624 - Pf1N1B4_362 0.57 +0.9 431,624 - Pf1N1B4_362 0.57 -0.9 431,803 + Pf1N1B4_362 0.66 +0.4 431,803 + Pf1N1B4_362 0.66 -1.7 431,803 + Pf1N1B4_362 0.66 -1.0 431,803 + Pf1N1B4_362 0.66 -0.6 431,804 - Pf1N1B4_362 0.66 -1.1 431,804 - Pf1N1B4_362 0.66 +0.8 432,154 + +1.0 432,471 - Pf1N1B4_363 0.10 -0.6 432,501 + Pf1N1B4_363 0.15 -0.9 432,502 - Pf1N1B4_363 0.15 -0.6 432,687 - Pf1N1B4_363 0.44 +0.4 432,687 - Pf1N1B4_363 0.44 -2.1 432,782 + Pf1N1B4_363 0.59 +0.4 432,865 - Pf1N1B4_363 0.72 -1.1 432,867 - Pf1N1B4_363 0.72 -1.5 432,867 - Pf1N1B4_363 0.72 -1.4 432,867 - Pf1N1B4_363 0.72 +0.1 432,937 + Pf1N1B4_363 0.83 -2.5 433,022 + -1.4 433,022 + -0.1 433,022 + -0.9 433,023 - -0.7 433,023 - +0.6 433,023 - +0.4 433,023 - -0.7 433,023 - +0.4 433,023 - +1.4 433,073 + +1.4 433,074 - -0.1 433,074 - -1.7 433,074 - -0.7 433,074 - +0.9 433,074 - +1.7 433,079 + -1.4 433,079 + +0.4 433,080 - -1.1 433,205 + Pf1N1B4_364 0.17 -0.1 433,205 + Pf1N1B4_364 0.17 -0.1 433,206 - Pf1N1B4_364 0.17 -1.3 433,206 - Pf1N1B4_364 0.17 +0.5 433,206 - Pf1N1B4_364 0.17 -0.5 433,392 - Pf1N1B4_364 0.37 -1.6 433,421 + Pf1N1B4_364 0.40 -0.9 433,509 - Pf1N1B4_364 0.49 -0.4 433,652 + Pf1N1B4_364 0.64 -0.9 433,653 - Pf1N1B4_364 0.64 +1.2 433,653 - Pf1N1B4_364 0.64 -0.1 433,934 + +0.4 433,956 + -1.1 433,956 + -0.1 433,958 + +1.4 433,958 + -0.6 433,959 - +0.4 433,994 - -0.9 433,994 - -0.9 434,017 + -1.1 434,018 - -0.9
Or see this region's nucleotide sequence