Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1414

Experiment: Paraquat dichloride 0.016 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1413 and Pf1N1B4_1414 overlap by 1 nucleotidesPf1N1B4_1414 and Pf1N1B4_1415 overlap by 4 nucleotides Pf1N1B4_1413 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 1,621,055 to 1,622,026 _1413 Pf1N1B4_1414 - DNA mismatch repair protein MutL, at 1,622,026 to 1,623,936 _1414 Pf1N1B4_1415 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 1,623,933 to 1,625,348 _1415 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -2 -1 0 1 2at 1622.250 kb on - strand, within Pf1N1B4_1414at 1622.498 kb on + strand, within Pf1N1B4_1414at 1622.499 kb on - strand, within Pf1N1B4_1414at 1622.499 kb on - strand, within Pf1N1B4_1414at 1622.499 kb on - strand, within Pf1N1B4_1414at 1622.566 kb on - strand, within Pf1N1B4_1414at 1622.566 kb on - strand, within Pf1N1B4_1414at 1622.566 kb on - strand, within Pf1N1B4_1414at 1622.567 kb on + strand, within Pf1N1B4_1414at 1622.567 kb on + strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.568 kb on - strand, within Pf1N1B4_1414at 1622.727 kb on - strand, within Pf1N1B4_1414at 1622.733 kb on - strand, within Pf1N1B4_1414at 1622.949 kb on - strand, within Pf1N1B4_1414at 1622.986 kb on + strand, within Pf1N1B4_1414at 1622.986 kb on + strandat 1622.987 kb on - strand, within Pf1N1B4_1414at 1622.987 kb on - strand, within Pf1N1B4_1414at 1622.987 kb on - strandat 1623.090 kb on - strand, within Pf1N1B4_1414at 1623.153 kb on - strand, within Pf1N1B4_1414at 1623.454 kb on - strand, within Pf1N1B4_1414at 1623.454 kb on - strand, within Pf1N1B4_1414

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.016 mg/mL
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1,622,250 - Pf1N1B4_1414 0.12 +0.9
1,622,498 + Pf1N1B4_1414 0.25 -0.4
1,622,499 - Pf1N1B4_1414 0.25 -0.5
1,622,499 - Pf1N1B4_1414 0.25 -1.3
1,622,499 - Pf1N1B4_1414 0.25 -0.2
1,622,566 - Pf1N1B4_1414 0.28 -0.6
1,622,566 - Pf1N1B4_1414 0.28 -0.4
1,622,566 - Pf1N1B4_1414 0.28 -0.4
1,622,567 + Pf1N1B4_1414 0.28 -0.8
1,622,567 + Pf1N1B4_1414 0.28 -1.4
1,622,568 - Pf1N1B4_1414 0.28 -0.5
1,622,568 - Pf1N1B4_1414 0.28 -1.0
1,622,568 - Pf1N1B4_1414 0.28 -1.7
1,622,568 - Pf1N1B4_1414 0.28 -0.6
1,622,568 - Pf1N1B4_1414 0.28 -1.1
1,622,568 - Pf1N1B4_1414 0.28 -1.1
1,622,568 - Pf1N1B4_1414 0.28 -0.6
1,622,568 - Pf1N1B4_1414 0.28 -0.1
1,622,568 - Pf1N1B4_1414 0.28 -1.1
1,622,568 - Pf1N1B4_1414 0.28 -1.6
1,622,568 - Pf1N1B4_1414 0.28 -0.7
1,622,568 - Pf1N1B4_1414 0.28 -0.2
1,622,568 - Pf1N1B4_1414 0.28 -1.0
1,622,568 - Pf1N1B4_1414 0.28 -0.5
1,622,727 - Pf1N1B4_1414 0.37 -1.1
1,622,733 - Pf1N1B4_1414 0.37 +0.9
1,622,949 - Pf1N1B4_1414 0.48 -1.2
1,622,986 + Pf1N1B4_1414 0.50 -0.9
1,622,986 + +2.5
1,622,987 - Pf1N1B4_1414 0.50 +0.6
1,622,987 - Pf1N1B4_1414 0.50 -0.1
1,622,987 - -0.7
1,623,090 - Pf1N1B4_1414 0.56 -2.2
1,623,153 - Pf1N1B4_1414 0.59 -0.6
1,623,454 - Pf1N1B4_1414 0.75 -1.8
1,623,454 - Pf1N1B4_1414 0.75 -0.5

Or see this region's nucleotide sequence