Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01450

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS01445 and MMJJ_RS01450 are separated by 79 nucleotidesMMJJ_RS01450 and MMJJ_RS01455 are separated by 164 nucleotidesMMJJ_RS01455 and MMJJ_RS01460 are separated by 78 nucleotides MMJJ_RS01445: MMJJ_RS01445 - O-phosphoserine--tRNA ligase, at 281,949 to 283,562 _RS01445 MMJJ_RS01450: MMJJ_RS01450 - iron ABC transporter substrate-binding protein, at 283,642 to 284,769 _RS01450 MMJJ_RS01455: MMJJ_RS01455 - triose-phosphate isomerase, at 284,934 to 285,599 _RS01455 MMJJ_RS01460: MMJJ_RS01460 - 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase, at 285,678 to 286,496 _RS01460 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 282.677 kb on - strand, within MMJJ_RS01445at 282.887 kb on + strand, within MMJJ_RS01445at 283.590 kb on - strandat 283.591 kb on + strandat 283.601 kb on - strandat 283.601 kb on - strandat 283.627 kb on - strandat 283.643 kb on - strandat 283.643 kb on - strandat 283.644 kb on + strandat 283.660 kb on + strandat 283.709 kb on - strandat 283.734 kb on - strandat 283.735 kb on + strandat 283.736 kb on - strandat 283.736 kb on - strandat 283.736 kb on - strandat 283.737 kb on + strandat 283.737 kb on + strandat 283.738 kb on - strandat 283.738 kb on - strandat 283.738 kb on - strandat 283.738 kb on - strandat 283.738 kb on - strandat 283.738 kb on - strandat 283.738 kb on - strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.739 kb on + strandat 283.740 kb on - strandat 283.741 kb on + strandat 283.765 kb on - strand, within MMJJ_RS01450at 283.787 kb on - strand, within MMJJ_RS01450at 283.789 kb on - strand, within MMJJ_RS01450at 283.804 kb on + strand, within MMJJ_RS01450at 283.804 kb on + strand, within MMJJ_RS01450at 283.806 kb on + strand, within MMJJ_RS01450at 283.806 kb on + strand, within MMJJ_RS01450at 283.806 kb on + strand, within MMJJ_RS01450at 283.806 kb on + strand, within MMJJ_RS01450at 283.834 kb on + strand, within MMJJ_RS01450at 283.834 kb on + strand, within MMJJ_RS01450at 283.838 kb on + strand, within MMJJ_RS01450at 283.842 kb on - strand, within MMJJ_RS01450at 283.844 kb on - strand, within MMJJ_RS01450at 283.845 kb on + strand, within MMJJ_RS01450at 283.852 kb on + strand, within MMJJ_RS01450at 283.852 kb on + strand, within MMJJ_RS01450at 283.873 kb on + strand, within MMJJ_RS01450at 283.893 kb on - strand, within MMJJ_RS01450at 283.894 kb on + strand, within MMJJ_RS01450at 283.902 kb on - strand, within MMJJ_RS01450at 283.926 kb on + strand, within MMJJ_RS01450at 283.936 kb on - strand, within MMJJ_RS01450at 283.937 kb on + strand, within MMJJ_RS01450at 283.960 kb on - strand, within MMJJ_RS01450at 284.221 kb on - strand, within MMJJ_RS01450at 284.222 kb on + strandat 284.222 kb on + strand, within MMJJ_RS01450at 284.222 kb on + strand, within MMJJ_RS01450at 284.236 kb on + strand, within MMJJ_RS01450at 284.279 kb on - strand, within MMJJ_RS01450at 284.282 kb on + strand, within MMJJ_RS01450at 284.321 kb on - strand, within MMJJ_RS01450at 284.387 kb on - strand, within MMJJ_RS01450at 284.387 kb on - strand, within MMJJ_RS01450at 284.388 kb on + strand, within MMJJ_RS01450at 284.388 kb on + strand, within MMJJ_RS01450at 284.388 kb on + strand, within MMJJ_RS01450at 284.391 kb on - strand, within MMJJ_RS01450at 284.401 kb on - strand, within MMJJ_RS01450at 284.401 kb on - strand, within MMJJ_RS01450at 284.402 kb on + strand, within MMJJ_RS01450at 284.413 kb on + strand, within MMJJ_RS01450at 284.464 kb on - strand, within MMJJ_RS01450at 284.465 kb on + strand, within MMJJ_RS01450at 284.467 kb on - strand, within MMJJ_RS01450at 284.467 kb on - strand, within MMJJ_RS01450at 284.505 kb on - strand, within MMJJ_RS01450at 284.506 kb on + strand, within MMJJ_RS01450at 284.506 kb on + strand, within MMJJ_RS01450at 284.508 kb on + strand, within MMJJ_RS01450at 284.556 kb on - strand, within MMJJ_RS01450at 284.556 kb on - strand, within MMJJ_RS01450at 284.556 kb on - strand, within MMJJ_RS01450at 284.557 kb on + strand, within MMJJ_RS01450at 284.569 kb on - strand, within MMJJ_RS01450at 284.569 kb on - strand, within MMJJ_RS01450at 284.570 kb on + strand, within MMJJ_RS01450at 284.570 kb on + strand, within MMJJ_RS01450at 284.570 kb on + strand, within MMJJ_RS01450at 284.573 kb on - strand, within MMJJ_RS01450at 284.608 kb on - strand, within MMJJ_RS01450at 284.608 kb on - strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.609 kb on + strand, within MMJJ_RS01450at 284.617 kb on + strand, within MMJJ_RS01450at 284.655 kb on - strand, within MMJJ_RS01450at 284.664 kb on - strandat 284.677 kb on + strandat 284.697 kb on - strandat 284.698 kb on + strandat 284.709 kb on - strandat 284.769 kb on - strandat 284.770 kb on + strandat 284.796 kb on - strandat 284.824 kb on + strandat 284.837 kb on - strandat 284.842 kb on + strandat 284.878 kb on - strandat 284.929 kb on - strandat 285.481 kb on + strand, within MMJJ_RS01455at 285.574 kb on - strandat 285.586 kb on + strandat 285.599 kb on - strandat 285.619 kb on + strandat 285.620 kb on - strandat 285.624 kb on + strandat 285.644 kb on - strandat 285.649 kb on + strandat 285.649 kb on + strandat 285.649 kb on + strandat 285.696 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
remove
282,677 - MMJJ_RS01445 0.45 -1.9
282,887 + MMJJ_RS01445 0.58 -0.9
283,590 - -0.2
283,591 + -1.3
283,601 - -0.6
283,601 - -0.3
283,627 - +1.7
283,643 - +0.5
283,643 - -1.9
283,644 + +0.2
283,660 + +1.1
283,709 - +1.4
283,734 - +1.3
283,735 + +1.5
283,736 - +0.7
283,736 - -0.0
283,736 - -1.7
283,737 + -0.9
283,737 + +0.3
283,738 - -0.6
283,738 - -1.5
283,738 - +0.2
283,738 - -1.4
283,738 - +1.1
283,738 - +0.7
283,738 - -0.7
283,739 + -1.2
283,739 + -0.5
283,739 + -1.6
283,739 + -0.4
283,739 + +0.7
283,739 + +1.0
283,739 + +0.1
283,739 + +0.2
283,739 + +0.3
283,739 + +1.9
283,740 - +1.6
283,741 + +0.4
283,765 - MMJJ_RS01450 0.11 +0.7
283,787 - MMJJ_RS01450 0.13 -0.2
283,789 - MMJJ_RS01450 0.13 -2.0
283,804 + MMJJ_RS01450 0.14 -0.1
283,804 + MMJJ_RS01450 0.14 -2.1
283,806 + MMJJ_RS01450 0.15 -0.5
283,806 + MMJJ_RS01450 0.15 +1.1
283,806 + MMJJ_RS01450 0.15 -0.0
283,806 + MMJJ_RS01450 0.15 -0.6
283,834 + MMJJ_RS01450 0.17 -0.5
283,834 + MMJJ_RS01450 0.17 -0.7
283,838 + MMJJ_RS01450 0.17 -0.0
283,842 - MMJJ_RS01450 0.18 -0.5
283,844 - MMJJ_RS01450 0.18 -1.3
283,845 + MMJJ_RS01450 0.18 +0.2
283,852 + MMJJ_RS01450 0.19 +1.1
283,852 + MMJJ_RS01450 0.19 -0.8
283,873 + MMJJ_RS01450 0.20 -0.9
283,893 - MMJJ_RS01450 0.22 +0.1
283,894 + MMJJ_RS01450 0.22 -1.0
283,902 - MMJJ_RS01450 0.23 +0.9
283,926 + MMJJ_RS01450 0.25 -0.8
283,936 - MMJJ_RS01450 0.26 +0.5
283,937 + MMJJ_RS01450 0.26 -1.1
283,960 - MMJJ_RS01450 0.28 -1.6
284,221 - MMJJ_RS01450 0.51 +0.2
284,222 + -0.9
284,222 + MMJJ_RS01450 0.51 -3.1
284,222 + MMJJ_RS01450 0.51 -0.2
284,236 + MMJJ_RS01450 0.53 +0.1
284,279 - MMJJ_RS01450 0.56 -1.9
284,282 + MMJJ_RS01450 0.57 +0.5
284,321 - MMJJ_RS01450 0.60 -1.0
284,387 - MMJJ_RS01450 0.66 -0.2
284,387 - MMJJ_RS01450 0.66 -2.0
284,388 + MMJJ_RS01450 0.66 -1.7
284,388 + MMJJ_RS01450 0.66 -0.9
284,388 + MMJJ_RS01450 0.66 +1.4
284,391 - MMJJ_RS01450 0.66 -0.6
284,401 - MMJJ_RS01450 0.67 -1.3
284,401 - MMJJ_RS01450 0.67 +1.1
284,402 + MMJJ_RS01450 0.67 +0.1
284,413 + MMJJ_RS01450 0.68 -0.7
284,464 - MMJJ_RS01450 0.73 -0.8
284,465 + MMJJ_RS01450 0.73 +1.0
284,467 - MMJJ_RS01450 0.73 -0.1
284,467 - MMJJ_RS01450 0.73 +0.2
284,505 - MMJJ_RS01450 0.77 -0.4
284,506 + MMJJ_RS01450 0.77 -0.8
284,506 + MMJJ_RS01450 0.77 +2.6
284,508 + MMJJ_RS01450 0.77 +0.6
284,556 - MMJJ_RS01450 0.81 +1.9
284,556 - MMJJ_RS01450 0.81 +0.7
284,556 - MMJJ_RS01450 0.81 +0.3
284,557 + MMJJ_RS01450 0.81 -0.3
284,569 - MMJJ_RS01450 0.82 +0.7
284,569 - MMJJ_RS01450 0.82 -0.7
284,570 + MMJJ_RS01450 0.82 -1.1
284,570 + MMJJ_RS01450 0.82 -0.8
284,570 + MMJJ_RS01450 0.82 +1.9
284,573 - MMJJ_RS01450 0.83 -0.2
284,608 - MMJJ_RS01450 0.86 +1.7
284,608 - MMJJ_RS01450 0.86 +0.2
284,609 + MMJJ_RS01450 0.86 +0.3
284,609 + MMJJ_RS01450 0.86 -1.2
284,609 + MMJJ_RS01450 0.86 -1.1
284,609 + MMJJ_RS01450 0.86 +0.6
284,609 + MMJJ_RS01450 0.86 +0.0
284,609 + MMJJ_RS01450 0.86 +0.9
284,609 + MMJJ_RS01450 0.86 +0.5
284,617 + MMJJ_RS01450 0.86 -3.1
284,655 - MMJJ_RS01450 0.90 -0.4
284,664 - -1.2
284,677 + +0.9
284,697 - +0.5
284,698 + -0.9
284,709 - +0.8
284,769 - +0.1
284,770 + +0.8
284,796 - +0.8
284,824 + -3.0
284,837 - +0.0
284,842 + -0.6
284,878 - -1.2
284,929 - -0.5
285,481 + MMJJ_RS01455 0.82 -2.1
285,574 - -1.9
285,586 + -1.9
285,599 - -1.5
285,619 + +0.1
285,620 - -2.7
285,624 + -0.9
285,644 - -1.7
285,649 + +0.6
285,649 + -0.9
285,649 + +1.7
285,696 - +0.4

Or see this region's nucleotide sequence