Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23335 and HSERO_RS23340 are separated by 214 nucleotides HSERO_RS23340 and HSERO_RS23345 are separated by 24 nucleotides HSERO_RS23345 and HSERO_RS23350 are separated by 13 nucleotides
HSERO_RS23335: HSERO_RS23335 - cell wall shape-determining protein, at 5,356,280 to 5,357,389
_RS23335
HSERO_RS23340: HSERO_RS23340 - lipoprotein, at 5,357,604 to 5,358,740
_RS23340
HSERO_RS23345: HSERO_RS23345 - 16S rRNA methyltransferase, at 5,358,765 to 5,359,700
_RS23345
HSERO_RS23350: HSERO_RS23350 - glycosylase, at 5,359,714 to 5,360,997
_RS23350
Position (kb) 5357
5358
5359 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5357.410 kb on + strand at 5357.699 kb on + strand at 5358.137 kb on + strand, within HSERO_RS23340 at 5358.137 kb on + strand, within HSERO_RS23340 at 5358.137 kb on + strand, within HSERO_RS23340 at 5358.174 kb on - strand, within HSERO_RS23340 at 5358.446 kb on + strand, within HSERO_RS23340 at 5358.484 kb on - strand, within HSERO_RS23340 at 5358.649 kb on - strand at 5358.722 kb on + strand at 5358.799 kb on - strand at 5358.859 kb on + strand, within HSERO_RS23345 at 5358.959 kb on + strand, within HSERO_RS23345 at 5359.134 kb on + strand, within HSERO_RS23345 at 5359.135 kb on + strand, within HSERO_RS23345 at 5359.167 kb on + strand at 5359.376 kb on + strand, within HSERO_RS23345 at 5359.550 kb on - strand, within HSERO_RS23345 at 5359.576 kb on - strand, within HSERO_RS23345 at 5359.591 kb on - strand, within HSERO_RS23345
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 5,357,410 + +0.3 5,357,699 + -1.3 5,358,137 + HSERO_RS23340 0.47 +0.7 5,358,137 + HSERO_RS23340 0.47 +1.1 5,358,137 + HSERO_RS23340 0.47 +0.7 5,358,174 - HSERO_RS23340 0.50 -1.1 5,358,446 + HSERO_RS23340 0.74 -2.9 5,358,484 - HSERO_RS23340 0.77 +0.0 5,358,649 - -0.6 5,358,722 + -1.6 5,358,799 - -0.0 5,358,859 + HSERO_RS23345 0.10 -1.1 5,358,959 + HSERO_RS23345 0.21 -0.3 5,359,134 + HSERO_RS23345 0.39 -0.1 5,359,135 + HSERO_RS23345 0.40 -2.3 5,359,167 + +1.4 5,359,376 + HSERO_RS23345 0.65 -0.8 5,359,550 - HSERO_RS23345 0.84 -1.0 5,359,576 - HSERO_RS23345 0.87 +0.9 5,359,591 - HSERO_RS23345 0.88 -1.3
Or see this region's nucleotide sequence