Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20645 and BPHYT_RS20650 are separated by 26 nucleotides BPHYT_RS20650 and BPHYT_RS20655 are separated by 73 nucleotides BPHYT_RS20655 and BPHYT_RS20660 are separated by 171 nucleotides
BPHYT_RS20645: BPHYT_RS20645 - RND transporter, at 192,960 to 194,378
_RS20645
BPHYT_RS20650: BPHYT_RS20650 - hypothetical protein, at 194,405 to 194,788
_RS20650
BPHYT_RS20655: BPHYT_RS20655 - hypothetical protein, at 194,862 to 195,305
_RS20655
BPHYT_RS20660: BPHYT_RS20660 - 2-methylisocitrate lyase, at 195,477 to 196,301
_RS20660
Position (kb) 194
195 Strain fitness (log2 ratio) -1
0
1 at 193.419 kb on + strand, within BPHYT_RS20645 at 193.485 kb on + strand, within BPHYT_RS20645 at 193.876 kb on - strand, within BPHYT_RS20645 at 194.176 kb on - strand, within BPHYT_RS20645 at 194.462 kb on + strand, within BPHYT_RS20650 at 194.686 kb on + strand, within BPHYT_RS20650 at 194.761 kb on + strand at 194.834 kb on + strand at 194.834 kb on + strand at 194.983 kb on + strand, within BPHYT_RS20655 at 194.984 kb on - strand, within BPHYT_RS20655 at 194.984 kb on - strand, within BPHYT_RS20655 at 194.986 kb on - strand, within BPHYT_RS20655 at 194.986 kb on - strand, within BPHYT_RS20655 at 195.154 kb on + strand, within BPHYT_RS20655 at 195.385 kb on + strand at 195.386 kb on - strand at 195.754 kb on + strand, within BPHYT_RS20660 at 195.782 kb on - strand, within BPHYT_RS20660
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 193,419 + BPHYT_RS20645 0.32 -0.6 193,485 + BPHYT_RS20645 0.37 -0.3 193,876 - BPHYT_RS20645 0.65 -0.7 194,176 - BPHYT_RS20645 0.86 +0.4 194,462 + BPHYT_RS20650 0.15 +0.1 194,686 + BPHYT_RS20650 0.73 +0.8 194,761 + -0.2 194,834 + +0.1 194,834 + +0.1 194,983 + BPHYT_RS20655 0.27 +0.3 194,984 - BPHYT_RS20655 0.27 +0.6 194,984 - BPHYT_RS20655 0.27 +0.7 194,986 - BPHYT_RS20655 0.28 -0.0 194,986 - BPHYT_RS20655 0.28 +0.2 195,154 + BPHYT_RS20655 0.66 +0.3 195,385 + +0.6 195,386 - +0.2 195,754 + BPHYT_RS20660 0.34 +0.3 195,782 - BPHYT_RS20660 0.37 +0.0
Or see this region's nucleotide sequence