Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20640 and BPHYT_RS20645 overlap by 4 nucleotides BPHYT_RS20645 and BPHYT_RS20650 are separated by 26 nucleotides BPHYT_RS20650 and BPHYT_RS20655 are separated by 73 nucleotides
BPHYT_RS20640: BPHYT_RS20640 - multidrug efflux RND transporter permease subunit, at 189,796 to 192,963
_RS20640
BPHYT_RS20645: BPHYT_RS20645 - RND transporter, at 192,960 to 194,378
_RS20645
BPHYT_RS20650: BPHYT_RS20650 - hypothetical protein, at 194,405 to 194,788
_RS20650
BPHYT_RS20655: BPHYT_RS20655 - hypothetical protein, at 194,862 to 195,305
_RS20655
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -1
0
1 at 192.058 kb on + strand, within BPHYT_RS20640 at 192.059 kb on - strand, within BPHYT_RS20640 at 192.154 kb on + strand, within BPHYT_RS20640 at 192.352 kb on + strand, within BPHYT_RS20640 at 192.354 kb on + strand, within BPHYT_RS20640 at 192.355 kb on - strand, within BPHYT_RS20640 at 192.358 kb on + strand, within BPHYT_RS20640 at 192.358 kb on + strand, within BPHYT_RS20640 at 193.419 kb on + strand, within BPHYT_RS20645 at 193.485 kb on + strand, within BPHYT_RS20645 at 193.876 kb on - strand, within BPHYT_RS20645 at 194.176 kb on - strand, within BPHYT_RS20645 at 194.462 kb on + strand, within BPHYT_RS20650 at 194.686 kb on + strand, within BPHYT_RS20650 at 194.761 kb on + strand at 194.834 kb on + strand at 194.834 kb on + strand at 194.983 kb on + strand, within BPHYT_RS20655 at 194.984 kb on - strand, within BPHYT_RS20655 at 194.984 kb on - strand, within BPHYT_RS20655 at 194.986 kb on - strand, within BPHYT_RS20655 at 194.986 kb on - strand, within BPHYT_RS20655 at 195.154 kb on + strand, within BPHYT_RS20655
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 192,058 + BPHYT_RS20640 0.71 -0.8 192,059 - BPHYT_RS20640 0.71 -0.4 192,154 + BPHYT_RS20640 0.74 -0.7 192,352 + BPHYT_RS20640 0.81 +0.5 192,354 + BPHYT_RS20640 0.81 -0.7 192,355 - BPHYT_RS20640 0.81 -0.4 192,358 + BPHYT_RS20640 0.81 -1.1 192,358 + BPHYT_RS20640 0.81 +0.4 193,419 + BPHYT_RS20645 0.32 -0.6 193,485 + BPHYT_RS20645 0.37 -0.3 193,876 - BPHYT_RS20645 0.65 -0.7 194,176 - BPHYT_RS20645 0.86 +0.4 194,462 + BPHYT_RS20650 0.15 +0.1 194,686 + BPHYT_RS20650 0.73 +0.8 194,761 + -0.2 194,834 + +0.1 194,834 + +0.1 194,983 + BPHYT_RS20655 0.27 +0.3 194,984 - BPHYT_RS20655 0.27 +0.6 194,984 - BPHYT_RS20655 0.27 +0.7 194,986 - BPHYT_RS20655 0.28 -0.0 194,986 - BPHYT_RS20655 0.28 +0.2 195,154 + BPHYT_RS20655 0.66 +0.3
Or see this region's nucleotide sequence