Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10360

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10355 and BPHYT_RS10360 are separated by 132 nucleotidesBPHYT_RS10360 and BPHYT_RS10365 are separated by 59 nucleotides BPHYT_RS10355: BPHYT_RS10355 - nitrate reductase, at 2,352,791 to 2,354,248 _RS10355 BPHYT_RS10360: BPHYT_RS10360 - MFS transporter, at 2,354,381 to 2,355,751 _RS10360 BPHYT_RS10365: BPHYT_RS10365 - peptidase M38, at 2,355,811 to 2,357,061 _RS10365 Position (kb) 2354 2355 2356Strain fitness (log2 ratio) -1 0 1at 2353.980 kb on - strand, within BPHYT_RS10355at 2354.150 kb on - strandat 2354.153 kb on + strandat 2354.192 kb on + strandat 2354.361 kb on - strandat 2354.629 kb on - strand, within BPHYT_RS10360at 2355.486 kb on + strand, within BPHYT_RS10360at 2355.487 kb on - strand, within BPHYT_RS10360at 2355.670 kb on - strandat 2355.798 kb on + strandat 2355.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,353,980 - BPHYT_RS10355 0.82 -0.1
2,354,150 - -0.6
2,354,153 + +0.5
2,354,192 + +0.2
2,354,361 - +0.9
2,354,629 - BPHYT_RS10360 0.18 +0.5
2,355,486 + BPHYT_RS10360 0.81 +0.7
2,355,487 - BPHYT_RS10360 0.81 +1.0
2,355,670 - -0.3
2,355,798 + +0.2
2,355,865 + +0.1

Or see this region's nucleotide sequence