Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26675

Experiment: sodium fluoride 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26670 and AO356_26675 are separated by 446 nucleotidesAO356_26675 and AO356_26680 are separated by 83 nucleotidesAO356_26680 and AO356_26685 are separated by 94 nucleotides AO356_26670: AO356_26670 - histidine kinase, at 6,072,114 to 6,074,324 _26670 AO356_26675: AO356_26675 - hypothetical protein, at 6,074,771 to 6,075,313 _26675 AO356_26680: AO356_26680 - hypothetical protein, at 6,075,397 to 6,076,095 _26680 AO356_26685: AO356_26685 - phosphate import ATP-binding protein PstB, at 6,076,190 to 6,076,951 _26685 Position (kb) 6074 6075 6076Strain fitness (log2 ratio) -2 -1 0 1at 6073.907 kb on + strand, within AO356_26670at 6074.107 kb on + strandat 6074.107 kb on + strandat 6074.175 kb on - strandat 6074.229 kb on + strandat 6074.230 kb on - strandat 6074.318 kb on + strandat 6074.318 kb on + strandat 6074.400 kb on - strandat 6074.420 kb on + strandat 6074.421 kb on - strandat 6074.625 kb on + strandat 6074.625 kb on + strandat 6074.628 kb on + strandat 6074.628 kb on + strandat 6074.641 kb on - strandat 6074.668 kb on - strandat 6074.681 kb on - strandat 6074.683 kb on - strandat 6074.866 kb on + strand, within AO356_26675at 6074.866 kb on + strand, within AO356_26675at 6075.096 kb on + strand, within AO356_26675at 6075.097 kb on - strand, within AO356_26675at 6075.121 kb on + strand, within AO356_26675at 6075.122 kb on - strand, within AO356_26675at 6075.122 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.294 kb on - strandat 6075.485 kb on + strand, within AO356_26680at 6075.547 kb on + strand, within AO356_26680at 6075.608 kb on - strand, within AO356_26680at 6075.629 kb on + strand, within AO356_26680at 6075.630 kb on - strand, within AO356_26680at 6075.630 kb on - strand, within AO356_26680at 6075.701 kb on + strand, within AO356_26680at 6075.701 kb on + strand, within AO356_26680at 6075.701 kb on + strand, within AO356_26680at 6075.702 kb on - strand, within AO356_26680at 6075.702 kb on - strand, within AO356_26680at 6075.932 kb on + strand, within AO356_26680at 6076.086 kb on + strandat 6076.192 kb on - strandat 6076.212 kb on + strandat 6076.212 kb on + strandat 6076.212 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM
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6,073,907 + AO356_26670 0.81 +0.3
6,074,107 + -1.2
6,074,107 + -0.3
6,074,175 - -0.2
6,074,229 + +0.3
6,074,230 - +0.3
6,074,318 + -1.3
6,074,318 + +0.2
6,074,400 - +0.8
6,074,420 + +0.7
6,074,421 - +0.3
6,074,625 + -0.2
6,074,625 + +0.8
6,074,628 + -0.7
6,074,628 + -1.3
6,074,641 - +0.8
6,074,668 - -1.6
6,074,681 - +0.3
6,074,683 - +0.5
6,074,866 + AO356_26675 0.17 -0.3
6,074,866 + AO356_26675 0.17 +0.2
6,075,096 + AO356_26675 0.60 +0.2
6,075,097 - AO356_26675 0.60 +0.3
6,075,121 + AO356_26675 0.64 +0.0
6,075,122 - AO356_26675 0.65 -0.1
6,075,122 - AO356_26675 0.65 -1.7
6,075,124 - AO356_26675 0.65 +0.0
6,075,124 - AO356_26675 0.65 +0.3
6,075,124 - AO356_26675 0.65 +0.6
6,075,124 - AO356_26675 0.65 +1.0
6,075,294 - -1.0
6,075,485 + AO356_26680 0.13 +0.3
6,075,547 + AO356_26680 0.21 -0.5
6,075,608 - AO356_26680 0.30 -1.0
6,075,629 + AO356_26680 0.33 -0.1
6,075,630 - AO356_26680 0.33 +0.1
6,075,630 - AO356_26680 0.33 +0.4
6,075,701 + AO356_26680 0.43 +0.1
6,075,701 + AO356_26680 0.43 -2.6
6,075,701 + AO356_26680 0.43 -0.2
6,075,702 - AO356_26680 0.44 -0.8
6,075,702 - AO356_26680 0.44 +1.0
6,075,932 + AO356_26680 0.77 -0.5
6,076,086 + -0.6
6,076,192 - -0.9
6,076,212 + +0.6
6,076,212 + +0.4
6,076,212 + +0.6

Or see this region's nucleotide sequence