Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26665

Experiment: sodium fluoride 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26655 and AO356_26660 are separated by 2 nucleotidesAO356_26660 and AO356_26665 overlap by 4 nucleotidesAO356_26665 and AO356_26670 are separated by 163 nucleotides AO356_26655: AO356_26655 - (2Fe-2S)-binding protein, at 6,067,645 to 6,068,145 _26655 AO356_26660: AO356_26660 - carbon monoxide dehydrogenase, at 6,068,148 to 6,068,954 _26660 AO356_26665: AO356_26665 - carbon monoxide dehydrogenase, at 6,068,951 to 6,071,950 _26665 AO356_26670: AO356_26670 - histidine kinase, at 6,072,114 to 6,074,324 _26670 Position (kb) 6068 6069 6070 6071 6072Strain fitness (log2 ratio) -2 -1 0 1at 6068.413 kb on + strand, within AO356_26660at 6068.770 kb on + strand, within AO356_26660at 6068.771 kb on - strand, within AO356_26660at 6068.771 kb on - strand, within AO356_26660at 6068.884 kb on + strandat 6069.141 kb on + strandat 6069.142 kb on - strandat 6069.148 kb on - strandat 6069.644 kb on - strand, within AO356_26665at 6070.171 kb on + strand, within AO356_26665at 6070.172 kb on - strand, within AO356_26665at 6070.284 kb on + strand, within AO356_26665at 6070.539 kb on + strand, within AO356_26665at 6070.539 kb on + strand, within AO356_26665at 6070.539 kb on + strand, within AO356_26665at 6070.540 kb on - strand, within AO356_26665at 6070.540 kb on - strand, within AO356_26665at 6070.821 kb on + strand, within AO356_26665at 6071.002 kb on - strand, within AO356_26665at 6071.033 kb on + strand, within AO356_26665at 6071.033 kb on + strand, within AO356_26665at 6071.304 kb on + strand, within AO356_26665at 6071.344 kb on - strand, within AO356_26665at 6071.544 kb on + strand, within AO356_26665at 6071.625 kb on + strand, within AO356_26665at 6071.630 kb on + strand, within AO356_26665at 6071.631 kb on - strand, within AO356_26665at 6071.816 kb on + strandat 6072.181 kb on + strandat 6072.182 kb on - strandat 6072.290 kb on + strandat 6072.388 kb on + strand, within AO356_26670at 6072.486 kb on - strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.562 kb on - strand, within AO356_26670at 6072.565 kb on + strand, within AO356_26670at 6072.566 kb on - strand, within AO356_26670at 6072.645 kb on + strand, within AO356_26670at 6072.746 kb on + strand, within AO356_26670at 6072.817 kb on - strand, within AO356_26670at 6072.908 kb on - strand, within AO356_26670

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM
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6,068,413 + AO356_26660 0.33 -1.3
6,068,770 + AO356_26660 0.77 -0.6
6,068,771 - AO356_26660 0.77 +0.6
6,068,771 - AO356_26660 0.77 +0.8
6,068,884 + -0.3
6,069,141 + -0.2
6,069,142 - +0.1
6,069,148 - -0.6
6,069,644 - AO356_26665 0.23 +0.4
6,070,171 + AO356_26665 0.41 -0.3
6,070,172 - AO356_26665 0.41 +0.7
6,070,284 + AO356_26665 0.44 -0.1
6,070,539 + AO356_26665 0.53 -0.4
6,070,539 + AO356_26665 0.53 -0.4
6,070,539 + AO356_26665 0.53 +0.6
6,070,540 - AO356_26665 0.53 -2.0
6,070,540 - AO356_26665 0.53 +0.6
6,070,821 + AO356_26665 0.62 -1.0
6,071,002 - AO356_26665 0.68 -1.0
6,071,033 + AO356_26665 0.69 -0.8
6,071,033 + AO356_26665 0.69 +1.0
6,071,304 + AO356_26665 0.78 -0.7
6,071,344 - AO356_26665 0.80 +0.7
6,071,544 + AO356_26665 0.86 +0.3
6,071,625 + AO356_26665 0.89 +0.3
6,071,630 + AO356_26665 0.89 -0.4
6,071,631 - AO356_26665 0.89 +0.6
6,071,816 + -0.3
6,072,181 + -0.1
6,072,182 - -0.2
6,072,290 + -1.2
6,072,388 + AO356_26670 0.12 +0.7
6,072,486 - AO356_26670 0.17 -1.4
6,072,561 + AO356_26670 0.20 -1.2
6,072,561 + AO356_26670 0.20 -0.6
6,072,561 + AO356_26670 0.20 +0.5
6,072,561 + AO356_26670 0.20 -0.2
6,072,562 - AO356_26670 0.20 +0.1
6,072,565 + AO356_26670 0.20 -0.1
6,072,566 - AO356_26670 0.20 +0.2
6,072,645 + AO356_26670 0.24 +0.4
6,072,746 + AO356_26670 0.29 -1.1
6,072,817 - AO356_26670 0.32 +0.3
6,072,908 - AO356_26670 0.36 -0.5

Or see this region's nucleotide sequence