Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22655

Experiment: sodium fluoride 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22645 and AO356_22650 are separated by 2 nucleotidesAO356_22650 and AO356_22655 overlap by 4 nucleotidesAO356_22655 and AO356_22660 overlap by 4 nucleotidesAO356_22660 and AO356_22665 are separated by 39 nucleotides AO356_22645: AO356_22645 - chemotaxis protein CheY, at 5,060,718 to 5,061,791 _22645 AO356_22650: AO356_22650 - chemotaxis protein CheD, at 5,061,794 to 5,062,291 _22650 AO356_22655: AO356_22655 - SAM-dependent methyltransferase, at 5,062,288 to 5,063,124 _22655 AO356_22660: AO356_22660 - chemotaxis protein CheW, at 5,063,121 to 5,063,657 _22660 AO356_22665: AO356_22665 - chemotaxis protein, at 5,063,697 to 5,065,355 _22665 Position (kb) 5062 5063 5064Strain fitness (log2 ratio) -1 0 1 2at 5061.659 kb on + strand, within AO356_22645at 5061.659 kb on + strand, within AO356_22645at 5061.659 kb on + strand, within AO356_22645at 5061.732 kb on + strandat 5061.771 kb on + strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5062.024 kb on - strand, within AO356_22650at 5062.024 kb on - strand, within AO356_22650at 5062.257 kb on + strandat 5062.258 kb on - strandat 5062.373 kb on + strand, within AO356_22655at 5062.373 kb on + strand, within AO356_22655at 5062.439 kb on + strand, within AO356_22655at 5062.439 kb on + strand, within AO356_22655at 5062.440 kb on - strand, within AO356_22655at 5062.590 kb on - strand, within AO356_22655at 5062.590 kb on - strand, within AO356_22655at 5062.741 kb on - strand, within AO356_22655at 5062.741 kb on - strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.813 kb on + strand, within AO356_22655at 5062.813 kb on + strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.897 kb on + strand, within AO356_22655at 5062.897 kb on + strand, within AO356_22655at 5062.898 kb on - strand, within AO356_22655at 5062.898 kb on - strand, within AO356_22655at 5062.937 kb on + strand, within AO356_22655at 5062.938 kb on - strand, within AO356_22655at 5063.113 kb on - strandat 5063.113 kb on - strandat 5063.588 kb on + strand, within AO356_22660at 5063.589 kb on - strand, within AO356_22660at 5063.599 kb on + strand, within AO356_22660at 5063.599 kb on + strand, within AO356_22660at 5063.599 kb on + strand, within AO356_22660at 5063.600 kb on - strand, within AO356_22660at 5063.600 kb on - strand, within AO356_22660at 5063.600 kb on - strand, within AO356_22660at 5063.672 kb on + strandat 5063.673 kb on - strandat 5063.673 kb on - strandat 5063.744 kb on - strandat 5063.866 kb on + strand, within AO356_22665

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM
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5,061,659 + AO356_22645 0.88 -1.7
5,061,659 + AO356_22645 0.88 +0.4
5,061,659 + AO356_22645 0.88 +1.4
5,061,732 + -0.1
5,061,771 + +0.5
5,061,772 - -1.3
5,061,772 - +0.0
5,061,772 - -1.2
5,061,772 - +0.2
5,061,772 - -0.4
5,061,772 - -0.1
5,062,024 - AO356_22650 0.46 -0.6
5,062,024 - AO356_22650 0.46 -0.5
5,062,257 + +0.1
5,062,258 - +1.3
5,062,373 + AO356_22655 0.10 -0.2
5,062,373 + AO356_22655 0.10 -0.1
5,062,439 + AO356_22655 0.18 +0.7
5,062,439 + AO356_22655 0.18 -1.1
5,062,440 - AO356_22655 0.18 -0.2
5,062,590 - AO356_22655 0.36 +0.1
5,062,590 - AO356_22655 0.36 +0.2
5,062,741 - AO356_22655 0.54 +0.4
5,062,741 - AO356_22655 0.54 -0.6
5,062,742 + AO356_22655 0.54 +0.5
5,062,742 + AO356_22655 0.54 +0.3
5,062,742 + AO356_22655 0.54 +0.1
5,062,743 - AO356_22655 0.54 -0.7
5,062,743 - AO356_22655 0.54 -1.7
5,062,743 - AO356_22655 0.54 +0.5
5,062,813 + AO356_22655 0.63 +0.0
5,062,813 + AO356_22655 0.63 -0.1
5,062,814 - AO356_22655 0.63 +1.8
5,062,814 - AO356_22655 0.63 +0.7
5,062,814 - AO356_22655 0.63 -1.0
5,062,814 - AO356_22655 0.63 +0.6
5,062,897 + AO356_22655 0.73 +0.8
5,062,897 + AO356_22655 0.73 -0.5
5,062,898 - AO356_22655 0.73 +0.7
5,062,898 - AO356_22655 0.73 +1.4
5,062,937 + AO356_22655 0.78 +0.1
5,062,938 - AO356_22655 0.78 -0.1
5,063,113 - -0.5
5,063,113 - -0.1
5,063,588 + AO356_22660 0.87 -1.5
5,063,589 - AO356_22660 0.87 -1.0
5,063,599 + AO356_22660 0.89 -0.3
5,063,599 + AO356_22660 0.89 -0.7
5,063,599 + AO356_22660 0.89 -0.3
5,063,600 - AO356_22660 0.89 -0.1
5,063,600 - AO356_22660 0.89 +1.7
5,063,600 - AO356_22660 0.89 -1.0
5,063,672 + -1.1
5,063,673 - +0.5
5,063,673 - +0.4
5,063,744 - +0.5
5,063,866 + AO356_22665 0.10 -1.2

Or see this region's nucleotide sequence