Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21580

Experiment: sodium fluoride 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21570 and AO356_21575 are separated by 219 nucleotidesAO356_21575 and AO356_21580 are separated by 204 nucleotidesAO356_21580 and AO356_21585 overlap by 4 nucleotidesAO356_21585 and AO356_21590 are separated by 53 nucleotidesAO356_21590 and AO356_21595 are separated by 232 nucleotides AO356_21570: AO356_21570 - hypothetical protein, at 4,830,884 to 4,831,312 _21570 AO356_21575: AO356_21575 - GTP pyrophosphokinase, at 4,831,532 to 4,831,960 _21575 AO356_21580: AO356_21580 - branched-chain amino acid ABC transporter permease, at 4,832,165 to 4,832,875 _21580 AO356_21585: AO356_21585 - branched-chain amino acid transporter, at 4,832,872 to 4,833,180 _21585 AO356_21590: AO356_21590 - hypothetical protein, at 4,833,234 to 4,833,440 _21590 AO356_21595: AO356_21595 - MFS transporter, at 4,833,673 to 4,834,884 _21595 Position (kb) 4832 4833Strain fitness (log2 ratio) -2 -1 0 1at 4831.209 kb on + strand, within AO356_21570at 4831.233 kb on + strand, within AO356_21570at 4831.233 kb on + strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.234 kb on - strand, within AO356_21570at 4831.276 kb on - strandat 4831.292 kb on + strandat 4831.293 kb on - strandat 4831.338 kb on + strandat 4831.338 kb on + strandat 4831.339 kb on - strandat 4831.339 kb on - strandat 4831.431 kb on + strandat 4831.431 kb on + strandat 4831.431 kb on + strandat 4831.432 kb on - strandat 4831.445 kb on - strandat 4831.515 kb on + strandat 4831.516 kb on - strandat 4831.533 kb on + strandat 4831.533 kb on + strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.534 kb on - strandat 4831.554 kb on + strandat 4831.613 kb on + strand, within AO356_21575at 4831.623 kb on - strand, within AO356_21575at 4831.704 kb on + strand, within AO356_21575at 4831.704 kb on + strand, within AO356_21575at 4831.705 kb on - strand, within AO356_21575at 4831.705 kb on - strand, within AO356_21575at 4831.705 kb on - strand, within AO356_21575at 4831.831 kb on + strand, within AO356_21575at 4831.963 kb on + strandat 4831.963 kb on + strandat 4831.964 kb on - strandat 4831.971 kb on + strandat 4831.971 kb on + strandat 4831.971 kb on + strandat 4831.972 kb on - strandat 4831.972 kb on - strandat 4831.972 kb on - strandat 4832.048 kb on - strandat 4832.053 kb on + strandat 4832.053 kb on + strandat 4832.054 kb on - strandat 4832.054 kb on - strandat 4832.056 kb on + strandat 4832.056 kb on + strandat 4832.056 kb on + strandat 4832.056 kb on + strandat 4832.057 kb on - strandat 4832.080 kb on + strandat 4832.081 kb on - strandat 4832.121 kb on + strandat 4832.122 kb on - strandat 4832.122 kb on - strandat 4832.122 kb on - strandat 4832.134 kb on + strandat 4832.134 kb on + strandat 4832.134 kb on + strandat 4832.134 kb on + strandat 4832.135 kb on - strandat 4832.135 kb on - strandat 4832.197 kb on - strandat 4832.213 kb on + strandat 4832.213 kb on + strandat 4832.260 kb on - strand, within AO356_21580at 4832.260 kb on - strand, within AO356_21580at 4832.308 kb on + strand, within AO356_21580at 4832.308 kb on + strand, within AO356_21580at 4832.308 kb on + strand, within AO356_21580at 4832.309 kb on - strand, within AO356_21580at 4832.460 kb on - strand, within AO356_21580at 4832.495 kb on + strand, within AO356_21580at 4832.580 kb on + strand, within AO356_21580at 4832.786 kb on + strand, within AO356_21580at 4832.787 kb on - strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.792 kb on + strand, within AO356_21580at 4832.793 kb on - strand, within AO356_21580at 4832.793 kb on - strand, within AO356_21580at 4832.912 kb on + strand, within AO356_21585at 4832.986 kb on + strand, within AO356_21585at 4833.038 kb on + strand, within AO356_21585at 4833.038 kb on + strand, within AO356_21585at 4833.039 kb on - strand, within AO356_21585at 4833.149 kb on + strand, within AO356_21585at 4833.149 kb on + strand, within AO356_21585at 4833.149 kb on + strand, within AO356_21585at 4833.150 kb on - strandat 4833.150 kb on - strandat 4833.390 kb on + strand, within AO356_21590at 4833.391 kb on - strand, within AO356_21590at 4833.391 kb on - strand, within AO356_21590at 4833.443 kb on + strandat 4833.443 kb on + strandat 4833.443 kb on + strandat 4833.443 kb on + strandat 4833.444 kb on - strandat 4833.495 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.636 kb on + strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.637 kb on - strandat 4833.647 kb on + strandat 4833.648 kb on - strandat 4833.648 kb on - strandat 4833.650 kb on + strandat 4833.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM
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4,831,209 + AO356_21570 0.76 -1.1
4,831,233 + AO356_21570 0.81 -0.5
4,831,233 + AO356_21570 0.81 -0.1
4,831,234 - AO356_21570 0.82 -0.7
4,831,234 - AO356_21570 0.82 +0.0
4,831,234 - AO356_21570 0.82 -2.1
4,831,234 - AO356_21570 0.82 -0.9
4,831,276 - +1.2
4,831,292 + +0.2
4,831,293 - +0.3
4,831,338 + +0.9
4,831,338 + +0.2
4,831,339 - -0.5
4,831,339 - -0.4
4,831,431 + -0.0
4,831,431 + +0.2
4,831,431 + -0.1
4,831,432 - -1.4
4,831,445 - +0.3
4,831,515 + +0.1
4,831,516 - -0.6
4,831,533 + -0.8
4,831,533 + -0.7
4,831,534 - -0.3
4,831,534 - +0.4
4,831,534 - -0.7
4,831,534 - -0.8
4,831,534 - +0.0
4,831,554 + +0.1
4,831,613 + AO356_21575 0.19 -1.0
4,831,623 - AO356_21575 0.21 -0.8
4,831,704 + AO356_21575 0.40 +0.2
4,831,704 + AO356_21575 0.40 +0.5
4,831,705 - AO356_21575 0.40 -0.2
4,831,705 - AO356_21575 0.40 -1.3
4,831,705 - AO356_21575 0.40 -0.8
4,831,831 + AO356_21575 0.70 -0.4
4,831,963 + -0.8
4,831,963 + -0.1
4,831,964 - +0.7
4,831,971 + -0.7
4,831,971 + +0.2
4,831,971 + +0.6
4,831,972 - +0.2
4,831,972 - +0.6
4,831,972 - +0.6
4,832,048 - -0.3
4,832,053 + +1.2
4,832,053 + -0.2
4,832,054 - -0.7
4,832,054 - +0.5
4,832,056 + -0.0
4,832,056 + -1.7
4,832,056 + +0.6
4,832,056 + +0.4
4,832,057 - -1.3
4,832,080 + +1.6
4,832,081 - +0.2
4,832,121 + -0.4
4,832,122 - +0.6
4,832,122 - +0.8
4,832,122 - +1.3
4,832,134 + -0.3
4,832,134 + +0.7
4,832,134 + -0.1
4,832,134 + +1.1
4,832,135 - -1.1
4,832,135 - -1.3
4,832,197 - +0.7
4,832,213 + +0.3
4,832,213 + +0.2
4,832,260 - AO356_21580 0.13 -0.4
4,832,260 - AO356_21580 0.13 -0.3
4,832,308 + AO356_21580 0.20 -0.1
4,832,308 + AO356_21580 0.20 +0.7
4,832,308 + AO356_21580 0.20 -0.8
4,832,309 - AO356_21580 0.20 +0.1
4,832,460 - AO356_21580 0.41 +0.2
4,832,495 + AO356_21580 0.46 -0.2
4,832,580 + AO356_21580 0.58 -0.7
4,832,786 + AO356_21580 0.87 +0.0
4,832,787 - AO356_21580 0.87 +1.7
4,832,792 + AO356_21580 0.88 -0.4
4,832,792 + AO356_21580 0.88 -0.4
4,832,792 + AO356_21580 0.88 -0.9
4,832,792 + AO356_21580 0.88 -0.2
4,832,792 + AO356_21580 0.88 +0.2
4,832,793 - AO356_21580 0.88 -0.3
4,832,793 - AO356_21580 0.88 +0.3
4,832,912 + AO356_21585 0.13 +0.6
4,832,986 + AO356_21585 0.37 -1.0
4,833,038 + AO356_21585 0.54 +0.5
4,833,038 + AO356_21585 0.54 +0.8
4,833,039 - AO356_21585 0.54 +0.5
4,833,149 + AO356_21585 0.90 +0.6
4,833,149 + AO356_21585 0.90 +0.0
4,833,149 + AO356_21585 0.90 -0.4
4,833,150 - -0.2
4,833,150 - -0.1
4,833,390 + AO356_21590 0.75 -0.1
4,833,391 - AO356_21590 0.76 -0.1
4,833,391 - AO356_21590 0.76 -0.1
4,833,443 + +0.0
4,833,443 + +0.4
4,833,443 + -1.8
4,833,443 + +0.6
4,833,444 - +0.3
4,833,495 + -0.2
4,833,636 + -0.1
4,833,636 + +0.4
4,833,636 + -1.4
4,833,636 + +0.1
4,833,636 + +0.3
4,833,637 - -0.8
4,833,637 - +0.2
4,833,637 - +0.9
4,833,637 - -0.5
4,833,637 - +1.2
4,833,637 - +0.4
4,833,637 - +0.9
4,833,647 + -0.4
4,833,648 - -2.3
4,833,648 - -0.2
4,833,650 + -0.8
4,833,651 - -0.1

Or see this region's nucleotide sequence