Experiment: sodium fluoride 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14990 and AO356_14995 are separated by 115 nucleotides AO356_14995 and AO356_15000 overlap by 4 nucleotides AO356_15000 and AO356_15005 are separated by 486 nucleotides
AO356_14990: AO356_14990 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,388,674 to 3,390,572
_14990
AO356_14995: AO356_14995 - geranyl transferase, at 3,390,688 to 3,391,575
_14995
AO356_15000: AO356_15000 - exodeoxyribonuclease VII small subunit, at 3,391,572 to 3,391,814
_15000
AO356_15005: AO356_15005 - hypothetical protein, at 3,392,301 to 3,393,089
_15005
Position (kb)
3391
3392 Strain fitness (log2 ratio)
-1
0
1
2 at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.612 kb on - strand at 3390.612 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.686 kb on + strand at 3390.687 kb on - strand at 3390.687 kb on - strand at 3390.687 kb on - strand at 3391.854 kb on - strand at 3392.054 kb on + strand at 3392.054 kb on + strand at 3392.055 kb on - strand at 3392.070 kb on + strand at 3392.095 kb on + strand at 3392.104 kb on + strand at 3392.105 kb on - strand at 3392.127 kb on + strand at 3392.127 kb on + strand at 3392.128 kb on - strand at 3392.128 kb on - strand at 3392.182 kb on + strand at 3392.182 kb on + strand at 3392.182 kb on + strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.183 kb on - strand at 3392.186 kb on + strand at 3392.186 kb on + strand at 3392.187 kb on - strand at 3392.187 kb on - strand at 3392.187 kb on - strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.202 kb on + strand at 3392.203 kb on - strand at 3392.215 kb on - strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.298 kb on + strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.299 kb on - strand at 3392.318 kb on - strand at 3392.532 kb on - strand, within AO356_15005 at 3392.532 kb on - strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.565 kb on + strand, within AO356_15005 at 3392.566 kb on - strand, within AO356_15005 at 3392.566 kb on - strand, within AO356_15005 at 3392.566 kb on - strand, within AO356_15005 at 3392.598 kb on + strand, within AO356_15005 at 3392.599 kb on - strand, within AO356_15005 at 3392.599 kb on - strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.673 kb on + strand, within AO356_15005 at 3392.674 kb on - strand, within AO356_15005 at 3392.674 kb on - strand, within AO356_15005 at 3392.756 kb on + strand, within AO356_15005 at 3392.757 kb on - strand, within AO356_15005
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM remove 3,390,588 - -1.5 3,390,588 - +0.6 3,390,588 - +0.1 3,390,588 - -0.3 3,390,588 - -0.1 3,390,588 - +0.0 3,390,588 - +0.5 3,390,588 - +0.1 3,390,592 - -1.5 3,390,592 - +1.3 3,390,592 - -0.2 3,390,592 - +0.6 3,390,592 - +0.5 3,390,594 - -0.2 3,390,594 - +0.2 3,390,594 - -1.5 3,390,594 - +1.5 3,390,612 - -0.3 3,390,612 - -1.7 3,390,617 - -0.3 3,390,617 - +0.4 3,390,617 - -0.0 3,390,617 - +0.3 3,390,667 + -0.3 3,390,667 + -0.5 3,390,667 + +0.6 3,390,667 + +0.5 3,390,667 + +0.5 3,390,667 + -0.0 3,390,667 + +0.1 3,390,668 - +0.2 3,390,668 - +0.1 3,390,668 - -0.1 3,390,668 - -1.0 3,390,668 - -0.1 3,390,668 - +0.3 3,390,668 - -0.0 3,390,668 - +0.1 3,390,686 + +0.8 3,390,687 - +0.4 3,390,687 - -1.1 3,390,687 - -0.3 3,391,854 - +0.6 3,392,054 + +0.4 3,392,054 + -0.9 3,392,055 - +0.2 3,392,070 + +1.5 3,392,095 + +0.5 3,392,104 + +0.1 3,392,105 - -1.1 3,392,127 + -0.2 3,392,127 + +0.2 3,392,128 - +0.9 3,392,128 - +0.3 3,392,182 + -0.7 3,392,182 + +0.5 3,392,182 + +0.9 3,392,183 - -0.5 3,392,183 - +0.4 3,392,183 - -0.1 3,392,183 - -0.0 3,392,183 - -0.7 3,392,183 - +1.3 3,392,186 + +1.0 3,392,186 + -1.2 3,392,187 - -0.9 3,392,187 - -0.5 3,392,187 - -0.9 3,392,202 + +0.9 3,392,202 + -0.1 3,392,202 + -0.2 3,392,202 + -0.9 3,392,202 + -0.7 3,392,202 + -1.3 3,392,202 + +0.6 3,392,202 + -0.1 3,392,203 - +1.4 3,392,215 - -0.7 3,392,298 + +2.1 3,392,298 + +0.3 3,392,298 + -1.2 3,392,298 + +0.9 3,392,298 + +0.5 3,392,298 + -0.8 3,392,298 + +0.4 3,392,298 + -1.2 3,392,298 + -0.4 3,392,298 + +1.6 3,392,298 + +0.1 3,392,299 - +0.8 3,392,299 - -1.3 3,392,299 - -0.1 3,392,299 - +0.3 3,392,299 - +0.4 3,392,299 - -0.5 3,392,299 - +0.5 3,392,299 - -0.4 3,392,299 - +1.2 3,392,299 - +0.3 3,392,299 - +0.7 3,392,299 - +0.5 3,392,318 - +0.4 3,392,532 - AO356_15005 0.29 -0.1 3,392,532 - AO356_15005 0.29 -0.8 3,392,565 + AO356_15005 0.33 +0.3 3,392,565 + AO356_15005 0.33 -0.7 3,392,565 + AO356_15005 0.33 +0.3 3,392,565 + AO356_15005 0.33 +0.7 3,392,565 + AO356_15005 0.33 -0.5 3,392,566 - AO356_15005 0.34 +0.4 3,392,566 - AO356_15005 0.34 +0.6 3,392,566 - AO356_15005 0.34 +0.3 3,392,598 + AO356_15005 0.38 -0.2 3,392,599 - AO356_15005 0.38 +0.5 3,392,599 - AO356_15005 0.38 +0.7 3,392,673 + AO356_15005 0.47 +0.5 3,392,673 + AO356_15005 0.47 -0.1 3,392,673 + AO356_15005 0.47 +0.1 3,392,673 + AO356_15005 0.47 +0.4 3,392,673 + AO356_15005 0.47 +0.8 3,392,673 + AO356_15005 0.47 +0.0 3,392,673 + AO356_15005 0.47 -0.3 3,392,673 + AO356_15005 0.47 +0.8 3,392,674 - AO356_15005 0.47 -0.3 3,392,674 - AO356_15005 0.47 -0.3 3,392,756 + AO356_15005 0.58 +0.2 3,392,757 - AO356_15005 0.58 -0.0
Or see this region's nucleotide sequence