Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13505

Experiment: sodium fluoride 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13500 and AO356_13505 overlap by 8 nucleotidesAO356_13505 and AO356_13510 are separated by 229 nucleotides AO356_13500: AO356_13500 - histidine kinase, at 3,058,363 to 3,064,299 _13500 AO356_13505: AO356_13505 - chemotaxis protein, at 3,064,292 to 3,064,771 _13505 AO356_13510: AO356_13510 - malonate decarboxylase subunit alpha, at 3,065,001 to 3,066,671 _13510 Position (kb) 3064 3065Strain fitness (log2 ratio) -2 -1 0 1 2at 3063.496 kb on + strand, within AO356_13500at 3063.562 kb on + strand, within AO356_13500at 3063.563 kb on - strand, within AO356_13500at 3063.583 kb on + strand, within AO356_13500at 3063.583 kb on + strand, within AO356_13500at 3063.584 kb on - strand, within AO356_13500at 3063.584 kb on - strand, within AO356_13500at 3063.584 kb on - strand, within AO356_13500at 3063.584 kb on - strand, within AO356_13500at 3063.584 kb on - strand, within AO356_13500at 3063.589 kb on + strand, within AO356_13500at 3063.589 kb on + strand, within AO356_13500at 3063.590 kb on - strand, within AO356_13500at 3063.604 kb on + strand, within AO356_13500at 3063.604 kb on + strand, within AO356_13500at 3063.605 kb on - strand, within AO356_13500at 3063.605 kb on - strand, within AO356_13500at 3063.616 kb on + strand, within AO356_13500at 3063.617 kb on - strand, within AO356_13500at 3064.228 kb on + strandat 3064.228 kb on + strandat 3064.229 kb on - strandat 3064.277 kb on - strandat 3064.277 kb on - strandat 3064.277 kb on - strandat 3064.637 kb on + strand, within AO356_13505at 3064.637 kb on + strand, within AO356_13505at 3064.638 kb on - strand, within AO356_13505at 3064.638 kb on - strand, within AO356_13505at 3064.677 kb on + strand, within AO356_13505at 3064.776 kb on + strandat 3064.776 kb on + strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.777 kb on - strandat 3064.963 kb on + strandat 3064.963 kb on + strandat 3064.963 kb on + strandat 3064.963 kb on + strandat 3064.964 kb on - strandat 3064.964 kb on - strandat 3064.964 kb on - strandat 3064.964 kb on - strandat 3064.964 kb on - strandat 3064.968 kb on + strandat 3064.969 kb on - strandat 3065.014 kb on + strandat 3065.015 kb on - strandat 3065.400 kb on + strand, within AO356_13510at 3065.400 kb on + strand, within AO356_13510at 3065.400 kb on + strand, within AO356_13510at 3065.400 kb on + strand, within AO356_13510at 3065.400 kb on + strand, within AO356_13510at 3065.400 kb on + strand, within AO356_13510at 3065.400 kb on + strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.401 kb on - strand, within AO356_13510at 3065.412 kb on + strand, within AO356_13510at 3065.412 kb on + strand, within AO356_13510at 3065.412 kb on + strand, within AO356_13510at 3065.412 kb on + strand, within AO356_13510at 3065.412 kb on + strand, within AO356_13510at 3065.412 kb on + strand, within AO356_13510at 3065.413 kb on - strand, within AO356_13510at 3065.413 kb on - strand, within AO356_13510at 3065.413 kb on - strand, within AO356_13510at 3065.413 kb on - strand, within AO356_13510at 3065.413 kb on - strand, within AO356_13510at 3065.486 kb on + strand, within AO356_13510at 3065.486 kb on + strand, within AO356_13510at 3065.486 kb on + strand, within AO356_13510at 3065.486 kb on + strand, within AO356_13510at 3065.486 kb on + strand, within AO356_13510at 3065.487 kb on - strand, within AO356_13510at 3065.487 kb on - strand, within AO356_13510at 3065.487 kb on - strand, within AO356_13510at 3065.487 kb on - strand, within AO356_13510at 3065.487 kb on - strand, within AO356_13510at 3065.487 kb on - strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.490 kb on + strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.491 kb on - strand, within AO356_13510at 3065.661 kb on + strand, within AO356_13510at 3065.661 kb on + strand, within AO356_13510at 3065.661 kb on + strand, within AO356_13510at 3065.661 kb on + strand, within AO356_13510at 3065.661 kb on + strand, within AO356_13510at 3065.662 kb on - strand, within AO356_13510at 3065.745 kb on + strand, within AO356_13510at 3065.746 kb on - strand, within AO356_13510

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM
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3,063,496 + AO356_13500 0.86 -0.7
3,063,562 + AO356_13500 0.88 +0.1
3,063,563 - AO356_13500 0.88 +0.2
3,063,583 + AO356_13500 0.88 -2.1
3,063,583 + AO356_13500 0.88 +0.0
3,063,584 - AO356_13500 0.88 +0.2
3,063,584 - AO356_13500 0.88 -0.0
3,063,584 - AO356_13500 0.88 -0.1
3,063,584 - AO356_13500 0.88 -0.2
3,063,584 - AO356_13500 0.88 -0.2
3,063,589 + AO356_13500 0.88 +0.9
3,063,589 + AO356_13500 0.88 +0.5
3,063,590 - AO356_13500 0.88 +0.5
3,063,604 + AO356_13500 0.88 +0.8
3,063,604 + AO356_13500 0.88 +1.5
3,063,605 - AO356_13500 0.88 +1.1
3,063,605 - AO356_13500 0.88 +0.1
3,063,616 + AO356_13500 0.88 +0.1
3,063,617 - AO356_13500 0.88 +0.6
3,064,228 + -0.1
3,064,228 + -1.5
3,064,229 - +1.1
3,064,277 - +0.7
3,064,277 - +1.8
3,064,277 - -0.1
3,064,637 + AO356_13505 0.72 +1.2
3,064,637 + AO356_13505 0.72 +0.1
3,064,638 - AO356_13505 0.72 +0.8
3,064,638 - AO356_13505 0.72 +1.3
3,064,677 + AO356_13505 0.80 +1.2
3,064,776 + +0.2
3,064,776 + +2.0
3,064,777 - -0.1
3,064,777 - +0.9
3,064,777 - -0.3
3,064,777 - +1.0
3,064,777 - -0.3
3,064,777 - +0.9
3,064,777 - +0.1
3,064,777 - -1.2
3,064,777 - +0.1
3,064,777 - -0.9
3,064,777 - +0.6
3,064,963 + +0.4
3,064,963 + +0.7
3,064,963 + +0.1
3,064,963 + +1.5
3,064,964 - -0.6
3,064,964 - -0.2
3,064,964 - +0.7
3,064,964 - -0.9
3,064,964 - -0.7
3,064,968 + -0.7
3,064,969 - -0.3
3,065,014 + +0.0
3,065,015 - +1.5
3,065,400 + AO356_13510 0.24 -0.4
3,065,400 + AO356_13510 0.24 -0.4
3,065,400 + AO356_13510 0.24 +0.3
3,065,400 + AO356_13510 0.24 +0.0
3,065,400 + AO356_13510 0.24 -1.4
3,065,400 + AO356_13510 0.24 -0.0
3,065,400 + AO356_13510 0.24 +0.5
3,065,401 - AO356_13510 0.24 +0.7
3,065,401 - AO356_13510 0.24 -0.8
3,065,401 - AO356_13510 0.24 +0.2
3,065,401 - AO356_13510 0.24 -0.7
3,065,401 - AO356_13510 0.24 +0.9
3,065,401 - AO356_13510 0.24 +0.5
3,065,401 - AO356_13510 0.24 +0.2
3,065,401 - AO356_13510 0.24 -0.3
3,065,412 + AO356_13510 0.25 +0.8
3,065,412 + AO356_13510 0.25 +0.4
3,065,412 + AO356_13510 0.25 -0.6
3,065,412 + AO356_13510 0.25 +0.1
3,065,412 + AO356_13510 0.25 +0.5
3,065,412 + AO356_13510 0.25 +0.6
3,065,413 - AO356_13510 0.25 +0.5
3,065,413 - AO356_13510 0.25 +0.7
3,065,413 - AO356_13510 0.25 +0.4
3,065,413 - AO356_13510 0.25 +0.1
3,065,413 - AO356_13510 0.25 +0.6
3,065,486 + AO356_13510 0.29 +0.1
3,065,486 + AO356_13510 0.29 -2.0
3,065,486 + AO356_13510 0.29 +0.6
3,065,486 + AO356_13510 0.29 -0.4
3,065,486 + AO356_13510 0.29 +0.3
3,065,487 - AO356_13510 0.29 +1.0
3,065,487 - AO356_13510 0.29 -0.1
3,065,487 - AO356_13510 0.29 -1.6
3,065,487 - AO356_13510 0.29 +0.7
3,065,487 - AO356_13510 0.29 +0.9
3,065,487 - AO356_13510 0.29 -1.3
3,065,490 + AO356_13510 0.29 +0.7
3,065,490 + AO356_13510 0.29 +0.3
3,065,490 + AO356_13510 0.29 -0.1
3,065,490 + AO356_13510 0.29 -0.2
3,065,490 + AO356_13510 0.29 -0.3
3,065,490 + AO356_13510 0.29 +0.7
3,065,490 + AO356_13510 0.29 +0.8
3,065,490 + AO356_13510 0.29 -0.3
3,065,490 + AO356_13510 0.29 -0.4
3,065,490 + AO356_13510 0.29 +0.6
3,065,490 + AO356_13510 0.29 +0.5
3,065,490 + AO356_13510 0.29 -0.6
3,065,491 - AO356_13510 0.29 -1.1
3,065,491 - AO356_13510 0.29 -0.5
3,065,491 - AO356_13510 0.29 -0.5
3,065,491 - AO356_13510 0.29 -0.1
3,065,491 - AO356_13510 0.29 +2.3
3,065,491 - AO356_13510 0.29 -1.0
3,065,491 - AO356_13510 0.29 -0.8
3,065,491 - AO356_13510 0.29 +0.0
3,065,491 - AO356_13510 0.29 -1.3
3,065,491 - AO356_13510 0.29 -1.1
3,065,491 - AO356_13510 0.29 +1.5
3,065,491 - AO356_13510 0.29 -0.9
3,065,661 + AO356_13510 0.39 +0.1
3,065,661 + AO356_13510 0.39 -0.9
3,065,661 + AO356_13510 0.39 -0.3
3,065,661 + AO356_13510 0.39 +0.5
3,065,661 + AO356_13510 0.39 -0.6
3,065,662 - AO356_13510 0.40 -0.5
3,065,745 + AO356_13510 0.45 -1.2
3,065,746 - AO356_13510 0.45 -0.8

Or see this region's nucleotide sequence